Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAAGACgtgagtgtatatttcattttttgcactggtaactttggtctaatgttgcttcatattgaacttatggacatttgaattgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g07440.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 6
TTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAAGACgtgagtgtatatttcattttt--tgcactggtaa--ctttggtctaatgttgcttcatattgaacttatggacatt--------tgaattgtag------
|||||||||||||| | | ||| ||| | ||||||||||| || ||||||||| ||||||| | | |||| |||||||| || |||||||| ||  | |||||||| | |    | | |    | || ||   |   |||  | |||       | ||  |||| |   | |  ||        ||| |||||       
TTATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACgtgagtatttgccacttctcacatacaatgtctagctttttttttaaaaaaatattattgtgaattggggaatgttgttaagagtgatttgtaaacagta