Sequence
atgc intronic sequence ATGC exonic sequenceCTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATgtattgtgacttctcttgctgatttttttcccttcagaacatgatcaattttgccccctggcatgaacaccatctttacttaacttccaaactatcatat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G21190.1 (Glycine max), 5'ss of exon 7
CTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATgtattgtgactt--ctcttgctgattttt-----ttcccttcagaacatgatcaattt-tgccccctggcatgaacaccatctttacttaacttccaaactatcatat------------
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CTCGGCGGTCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAATTACAAAGACGTGGAGACCCTCAAATgtaatttgacttgcctattgcaagattttattgattcatttcaattccctataagtatacacttcactgcatgctttcaatcctccatgttgtaacgaatggttttacattttatcgtag
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G32990.1 (Glycine max), 5'ss of exon 7
CTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATgtattgtgactt--ctcttgctgatttttttcccttcagaacatgatcaattttgccccctggcatgaacaccatctttacttaacttccaaactatcatat
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CTCGGCGGTCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGATGAATTACAAAGACGTGGAGACCCTCTAATgtaatttgacttgcctattgcaagattttat------------tgattcatttcaattctctacaag-----------------------------------
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G11100.1 (Glycine max), 5'ss of exon 7
------------------------------------------------CTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATgtattgtgacttctcttgctgatttttttcccttcagaacatgatcaattttgccccctggcatgaacaccatctttacttaacttccaaactatcatat
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GGAGGGGACGTGGGTATGCACGCCCTGCAGGAGGTGGTGCAATGGCACCCCGACGATCCTCCTTAAAGCCGTTGCATTGGAGCAAGgttacgagggcattacaaggaagtttatgggaag--------------------------------------------------------------------------------------------------------------------------------
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 5'ss of exon 4
CTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATgtattg---tgactt--ctcttgctgatttttttcccttcagaacatgat----caattttgccccctggcatgaacaccatct-ttacttaacttcca--aactatcatat-----------------------------------
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AAAAAAAGTCTTCCCTGAAGCCATTACACTGGGTTAAAGTAACAAGGGCCTTGCAAGGGAGCTTATGGGATGAGTTACAGAGACATGGAGAATCACAAACgtattggactaactttatctttgctttcctctttcttctaagttccttctcttgcacctttgtttatcaaggaactaattatgtgctgttggggttttattgactattgtttttcaattaatcatatttttctttcttttctgctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184855|gb|CF604209.1|CF604209EST: GGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAAT TGCGCCAGAATTTGATGTCTCAGAGTTGGAGACTCTTTTCTCCGCCACAGT
genomic: GGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATgtattgtgac ... ttaatcctagTGCGCCAGAATTTGATGTCTCAGAGTTGGAGACTCTTTTCTCCGCCACAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATgtattgtgacttctcttgctgatttttttcccttcagaacatgatcaattttgccccctggcatgaacaccatctttacttaacttccaaactatcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA