Sequence
atgc intronic sequence ATGC exonic sequenceCTCAAAGGCAAGTGGGTGAAACTGCCCTCAATGACAACAGCTCTCGATCACACCAGATAATAAGGCTGgttagtttcatggccataatttcacttgatgcttgtcaaaccaaatattgctactgcgagctcatggtaactattttttggatgacaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03290.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G31270.1 (Glycine max), 5'ss of exon 6
CTCAAAGGCAAGTGGGTGAAACTGCCCTCAATGACAACAGCTCTCGATCACACCAGATAATAAGGCTGgttagtttcatggccataatt-tcacttgatgcttgtcaaaccaaatattgctactgcgagctcatggtaactattttttggatgacaaatgcag
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CTCAAAGGCAGGTTGGTGAAACTGCTCTAAATGATAACAGTTCACGGTCTCACCAGATAATAAGACTGGTAAgtgatagtagtacaattattttttgcaactcggaag-------------------------------------------------------
upper sequence: Vv17s0000g03290.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G10790.1 (Glycine max), 5'ss of exon 6
CTCAAAGGCAAGTGGGTGAAACTGCCCTCAATGACAACAGCTCTCGATCACACCAGATAATAAGGCTGgttagtttcatggccataatttcacttgatgcttgtcaaacca---aatattgctactgc---gagctcatggtaactattttttggatgacaaatgcag--------------
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CTCAAAGGCAGGTTGGTGAAACTGCTCTAAATGATAACAGTTCGCGGTCTCACCAAATAATAAGACTGgtaagtgatagtacaattatttg--ttggaactcgaaagattatcttattttcctttccctcataacttatggaaacaattttttattttattcctttttggtgtatattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687709|gb|EE065429.1|EE065429EST: AAACTGCCCTCAATGACAACAGCTCTCGATCACACCAGATAATAAGGCTG ACAATAGAAAGTACTCTCCGAGAAAATTCAGGTTGCGTCAAGTCTTTTGTT
genomic: AAACTGCCCTCAATGACAACAGCTCTCGATCACACCAGATAATAAGGCTGgttagtttca ... acaaatgcagACAATAGAAAGTACTCTCCGAGAAAATTCAGGTTGCGTCAAGTCTTTTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCAAAGGCAAGTGGGTGAAACTGCCCTCAATGACAACAGCTCTCGATCACACCAGATAATAAGGCTGgttagtttcatggccataatttcacttgatgcttgtcaaaccaaatattgctactgcgagctcatggtaactattttttggatgacaaatgcag
- - - - - - - - - - - - - - - - - - CAGCTC