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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGGTGACTTCAGCTGTCATTGCTAAAATACATACCATTGATTGGACTGTTGAGCTCTTAAAAACCGATACTCTTTTGGCTGGGATGAGAATCAACTGgtaagtaatttgaaaatttgcatatgatacatgtacacaaaagagtagtagatggtatataaactactgaaagatgagctatgggagggaaccttatggacaaatattagaattttattgctctgctgttaatatgacagttctccattttgagtttagatgaagatggggttaatgcatgattaattttggtgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g02700.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02700.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G05620.1 (Glycine max), 5'ss of exon 7
---------------------------------------------GACTGGTGACTTCAGCTGTCATTGCTAAAATACATACCATTGATTGGACTGTTGAGCTCTTAAAAACCGATACTCTTTTGGCTGGGATGAGAATCAACTGgtaagtaatttgaaaatttgcatatgatacatgtacacaaaagagtagtagatggtatataaactactgaaagatgagctatgggagggaaccttatggacaaatattagaattttattgctctgctgttaatatgacagttctccattttgagtttagatgaagatggggttaatgcatgattaattttggtgcag
                                             || |||||||||||||  ||||||| ||| | || || |||||||||||||| || ||| |||| || ||||||||| |||| |                                                                                                                                                                                                                     
GTGCACTATCCTGATTTTGATGATGAGCAGCTCTATAGAATGCAAGATTGgtgacttcagcaatcattgcaaaagttcacacaattgattggactgtagaactcctaaagactgatactcttctggcag---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------