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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGATgtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagctgatgtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g01850.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G18080.1 (Glycine max), 5'ss of exon 6
GCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGATgtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagct-----gat---gtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcag------------------------------------------------
||||||||||||||||| ||||| || |||||||| ||| | || ||||||||||| ||||| || || || ||||| |   ||||||   |        |||  | ||||     ||  | |||||| |   || || ||      ||    ||  || | ||  |||| |   | |||| ||   | |  || | |||    |  |||  ||   |                                                    
GCAAAGCGAGATCCTTATCGCTTCCGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAATgtatgattatttatgtgtttttgacattcaactttctgtaattcattcttagtacatagtttaatctttattaatttgatcacattgaagcagtgaacttatgtttttaattcactcttagtacatagtttaatctttattagtttgatcacattgaagcagtaaacttaatatttttttcattttcatgcttcag

upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G36900.1 (Glycine max), 5'ss of exon 7
GCAAAGCGAGATCCTTACCGCTTTCGATTTCCTATTGAAATGCGCTTTGTTGATCCTAATATTGATCACCTGATgtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagctgatgtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcag
||||||||||||||||| ||||| || |||||||| ||| | ||  |||| ||||| ||||| ||||| || ||||| |   ||||||   |        |||  | ||||     ||  | |||||| |   ||     | || | |  ||     | ||||||      || || |  |     |                           
GCAAAGCGAGATCCTTATCGCTTCCGCTTTCCTATCGAACTTCGTCTTGTCGATCCAAATATAGATCATCTAATgtatgattatttatgtgttttttacattcaactttctgtaattcattcttagtacatagtt-----taatctttattaa----tttgatca----cattgaagcagtgaactt---------------------------