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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctataaattcttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g01720.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 6
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctat-aaattc-ttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag
||||||||||||||||| |||||||||   || |||||  | |||||||| |||||||||||||| || || ||||| || || |||||||| |||||||||  |||||| | | ||||  | ||     || ||||  ||  |  || |||  || | ||    ||  |||||  | ||||             
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGCAGAATGGCTCGATATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTGCTGgtttgtttctttcatattcactttagcaatatctcatggct-gtacatagcactttgtcatgatttagctttgtacctcaatgcag---------

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 6
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttct-ataaattcttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag
||||||||||||||||| |||||||||   || |||||  | ||||||||||||||||||||||| || || ||||| || || |||||||| ||| |||||  ||||||   | ||||   |  |   |||||||  ||  |  || ||     ||| ||  || | ||||| | |      |||   |||||
TCTTCTTTTATTGGTCGGGCATCTGCCAAAAATAAGGGTAGAATGGCTCGTTATCTTGCAAACAAATGCTCAATTGCATCACGGATTGACTGCTTTTCTGgtttgtttcttgcatattcactttagcatatttcatggct-gtacatagc---cctttgtc--atgattttgtggta------tcttaatgcag

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G11560.1 (Glycine max), 5'ss of exon 6
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctataaattcttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag
||||||||||| ||||| |||||||||   || ||||| || || ||||| |||||||| ||||| ||||| |||||||| || |||||||| ||| |||||  ||||||   | ||    | | |  || | ||  || |    | | | ||  ||   || ||   |  ||      |  | ||  |||||
TCTTCTTTTATCGGTCGAGCATCTGCCAAAAATAAGGGCCGAATAGCTCGCTATCTTGCTAACAAATGTTCAATTGCTTCACGGATTGACTGCTTTTCTGgtttgtttcttacatttaaattttagcaatcttatgccttact--tagtacctcattgcttgttaggatgattttgttgtactgtg-atgcag

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctataaattcttatatggtcatttcatttctcatggatggcaactttttatctgataaatt-tgttgcacaatcttctgtgtgcag
||||| || ||||| || ||||||||   ||||||||| ||||| ||||||||||||||||||||||| || || || || || ||||| ||||||||||||||   |||  || | |||  |      |||    |   ||| ||  |   | |  |  || |||||| |||  |   || | || ||     
TCTTCCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCATCCCGGATTGATTGTTTTGCTGgtaaaaatctgaaactccttgaagaagagttttggatt--atgaatt-ctgttgtgaaagtgttaaattatgtgccctgatgtcctatgcag--

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G12860.1 (Arabidopsis thaliana), 5'ss of exon 6
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctataaat--tcttatatggtcatttcatttctcatggatggcaactttttatctgataaatttgttgcacaatcttctgtgtgcag
|| || || || || |||||||||||    |||||||| ||||| |||||||  |||||||||||||||||||||||||| || ||||| |||||  | |||||   |||| | |   || |  ||          | | |    ||||     || ||||    || |            |  | | | |||||
TCATCATTCATCGGGCGTGCATCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGTTCCATTGCTTCCCGGATTGATTGTTTCTCAGgtaataatctagagaatgtcctgaataagagagaggtgtttgggagatgatgcgttgttattaactacaaaatcatggtggttgtgt-tatgcag

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S88_119V6.1 (Physcomitrella patens), 5'ss of exon 6
TCTTCTTTTATTGGTCGTGCATCTGCCCGGAACAAGGGACGTATGGCTCGTTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttctataaattcttatatggtcatttcatttctcatggatgg---caactttttatctgataaatttgttgcacaatcttctgtgtgcag-------------------------------
|| ||||| |||||  | |||  | ||  |||||||||||||||  | ||||||||||| || || ||||| |||||||| || ||||| || ||| ||||||||    | | | | ||    ||   || | | |        |||      | |    || | | |  ||     ||  |  |     | |                                  
TCATCTTTCATTGGGAGGGCAAGTACCAAGAACAAGGGACGTATCTCGCGTTATCTTGCGAATAAATGTTCAATTGCTTCACGAATTGATTGCTTTTCTGgtaaggcatttttactcctgtgttgtagatgtaaatgtgtgcccatgagcctgagtgaggattttacatgttccgctcaggaattctgacgcgtctctgaggtataacgtaccatcaatcactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32459972|gb|CD801146.1|CD801146
EST:     TTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTG                         AGAGTAACACCACGGTTTTTGAGGAGAAACTCCGTGAACAAGTTGAGGAGC
genomic: TTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttct ... ctgtgtgcagAGAGTAACACCACGGTTTTTGGGGAGAAACTCCGTGAACAAGTTGAGGAGC
EST: gi|33405708|gb|CF211335.1|CF211335
EST:     TTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTG                         AGAGTAACACCACGGTTTTTGGGGAGAAACTCCGTGAACAAGTTGAGGAGC
genomic: TTATCTTGCAAACAAGTGTTCCATTGCTTCTCGTATTGACTGTTTTGCTGgtaagtttct ... ctgtgtgcagAGAGTAACACCACGGTTTTTGGGGAGAAACTCCGTGAACAAGTTGAGGAGC