Sequence
atgc intronic sequence ATGC exonic sequenceGGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgttcttatggatatggttctatgtcatctttcttatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 6
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgttcttatggatatggttctatgtcatctttcttatag
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GGTGGGCTGATAATTAGTGACTCACTGAACCATAACTCAATTGTCAATGGTGCAAGAGGATCCGGTGCAACCGTTCGGGTTTTCCAGCATAACTgtaagcttttat-gcctttatgcaatgcgaagcaatattcactgt-----------ttgtg-gttcacaaggacttatttgtcag-catgctgcttacag
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 6
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgttcttatggatatggttctatgtcatctttcttatag
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GGAGGACTCATAATTAGTGACTCATTGAACCATAACTCTATAGTGAATGGGGCTAGGGGTTCAGGAGCTACTGTTCGGGTTTTTCAACATAACAgtaagctcac--------tgataattgacagctactcttgcaagcgatgagctcaacaatggatcacaatacataatgcttccctttat-tttcttccag
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G142030_T01 (Zea mays), 5'ss of exon 6
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgttcttatggatatggttctatgtcatct---ttcttatag
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GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACTgtgagtta---------ttgtgcttccgg----------caatgcaaatca-atatttggtctctcttgttcatgacttaccatggcaaatgaaatcttacag
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G137556_T01 (Zea mays), 5'ss of exon 5
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaa-atttaccctatgaaacatacatttgagtgttcttatggatatggttctatgtcatctttcttatag
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GGTGGACTGATAATTAGTGACTCTCTGAATTATAACTCAATTGTCAATGGTGCAAGAGGATCCGGTGCAACTGTTAGGGTTTTCCAACATAACTgtaagttgttgtgaatttcaataatacagatcagcatttgatctctcctgttcataatgacttaccatggcaaatgtaatcttagagc-ccctgctcattt
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgttcttatggatatggt-tctatgtcatctttcttatag---
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GGAGGGTTGATAATAAGTGATTCTTTGAACCATACTTCAATTATCAATGGTGCTCGAGGTTCAGGAGCCACTATCCGCGTTTTCCAACACAACAgtaagc----atttctatgcttcactctccatattttcatgacat-acatatatatttatgccctcttgttgatggcttctcaacacctgctcatttggaaaag
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgt--tcttatggatatggttctatgtcatctttcttatag
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GGAGGGTTGATAATAAGCGATTCTTTGAACCATACTTCGATTGTCAACGGCGCTCGAGGTTCAGGAGCTACTATCCGTGTTTTCCAACACAACAgtaagcatttcttatgcttcattttcca---taattttttgctagtaaa-------ttgggtgacatgtcatctttatgctcttttgttaaattcttcgcag
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaattt-accctatgaaacatacatttgagtgttcttatggatatggttctatgtcatctttcttatag
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GGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACAgtaagcatttgttgtgtttcagcttcagaggttctttccatataatggatggcttacatgtatattctcttgcttgtgtttcttag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34542640|gb|CF510872.1|CF510872EST: CAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATA TACCATCTCACTTGGAGAAAGTTTTGAGAGAACAAATTGCTGAGGGACAAC
genomic: CAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgat ... tttcttatagTACCATCTCACTTGGAGAAAGTTTTGAGAGAACAAATTGCTGAGGGACAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaatttaccctatgaaacatacatttgagtgttcttatggatatggttctatgtcatctttcttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT