1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGgttagcctttctttcactctcatagtcagttaaggttttatatagtttctatgtctcatttgtcttgtatcatttcag
species | Vitis vinifera |
transcript | Vv17s0000g00160.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG AAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGAEST: gi|29783904|gb|CB343962.2|CB343962
genomic: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGgttagccttt ... atcatttcagAAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGA
EST: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG AAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGAEST: gi|46917791|gb|CN547120.1|CN547120
genomic: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGgttagccttt ... atcatttcagAAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGA
EST: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG AAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGAEST: gi|29783991|gb|CB344183.2|CB344183
genomic: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGgttagccttt ... atcatttcagAAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGA
EST: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG AAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGAEST: gi|28965206|gb|CB344239.1|CB344239
genomic: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGgttagccttt ... atcatttcagAAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGA
EST: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAG AAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGA
genomic: GTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGgttagccttt ... atcatttcagAAACTTATTATAGCCCCAGTGAAAAAGGAGCTGGGGCTTGCATTCAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAAAAGCGGTGTTCCCCTTGTGGCACATGAAAAATTTGCAGAACCTAGAGAAGTGGAGgttagcctttctttcactctcatagtcagttaaggttttatatagtttctatgtctcatttgtcttgtatcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG