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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGATGTTTCACTTCAGATTCAGATGTTTTCCTTTTTGGTGCAAGGACAGTTTACAGAGACATTTGCCTTGgtgagtaaatggggattctgctagtcctggagtctttacttttcttcaactattttgcttttgtatactgatattgctttctgacaaattag

Basic information

species Vitis vinifera
transcript Vv16s0100g01300.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g01130.1 (Oryza sativa), 5'ss of exon 6
GATGGATGTTTCACTTCAGATTCAGATGTTTTCCTTTTTGGTGCAAGGACAGTTTACAGAGACATTTGCCTTGgtgagtaaatggggattctgctagtcctggagtctttacttttcttcaactattttgcttttgtatactgatattgctttctgacaaattag-----------------------------------------------------
||||| |||||||||||||| || |||| ||| |||||||| || ||||| ||||| |||||  ||| | | |||||    |   |  | ||  | | | || |    | ||   || ||||| |||||| |  ||  | |||   ||| | | | |  || |||                                                     
GATGGCTGTTTCACTTCAGACTCGGATGCTTTTCTTTTTGGCGCTAGGACTGTTTATAGAGATGTTTTCATAGgtga----agctgattgcttattggcttgca----tcacaactcatcaacaattttgttgctgcctgctgcc-ttgttctattatcaactagtctttgcttatatatttatctggaaatcctactcatgttctcaatcaaattag

upper sequence: Vv16s0100g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G31860.1 (Glycine max), 5'ss of exon 6
GATGGATGTTTCACTTCAGATTCAGATGTTTTCCTTTTTGGTGCAAGGACAGTTTACAGAGACATTTGCCTTGgtgagtaaatggggattctgctagtcctggagtctttacttttcttcaactat-tttgcttttgtatactgata--ttgctttctgacaaattag
||||| ||||||| ||||||||||||  | ||||||||||||||||||||||| || || || || |||||||||||||| |      || |  ||    ||| |  ||| |||| | | || ||| ||| | |  |  || ||||   ||| ||  | |  | ||||
GATGGGTGTTTCAGTTCAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTATATAGGGATATCTGCCTTGgtgagtagacaacc-ttgttttatcattggtgaattttctttgcattaagtatgttttcatacgactaatgatgagttgtttattaatgagttag

upper sequence: Vv16s0100g01300.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G48900.2 (Arabidopsis thaliana), 5'ss of exon 6
GATGGATGTTTCACTTCAGATTCAGATGTTTTCCTTTTTGGTGCAAGGACAGTTTACAGAGACATTTGCCTTGgtgagtaaatggggattctgcta-gtcctggagtctttacttttcttcaactattt-tgcttttgta--tactgatattgctttctgacaaattag
|| |  ||||| |  |  ||||| ||| | |||||||||||||||| ||| || |||||||| || ||||||||| |||  |  | || |||     ||  |||  |||||     |||   |   ||  |  | || ||  | || |||    || |  |  || |||
GACGCCTGTTTTAGCTTTGATTCGGATATCTTCCTTTTTGGTGCAAAGACTGTATACAGAGAAATATGCCTTGgtcagtggaaagagactctttagtgtgttggtttcttttaccgtctgatatggttaatagtattataagtcctaataa-atttgccaatgaactag