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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCCGAGGATTGTCCTTGTGGATGTAGATGATCAGCGTCTAGCTATTGCAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggtttaactatgtacaagtatctgtccttcatttcaggcctaggcatcaggggtgttgaaccaggagttatcgcatacacctaaggccttaaaaatctgtcatttgccaagggattccatttctttccatttaacaatacaactggttttgacctttgaag

Basic information

species Vitis vinifera
transcript Vv16s0100g00290.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110408851|gb|EC974498.1|EC974498
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110401034|gb|EC967627.1|EC967627
EST:     CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110702886|gb|EE079247.1|EE079247
EST:     CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110401205|gb|EC967807.1|EC967807
EST:     CGAATATTCAG                         GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|37190683|gb|CF610032.1|CF610032
EST:     CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110711540|gb|EE088133.1|EE088133
EST:     AAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCA-CGAATATTTCAG                         -ATCTANATGAAGAAGTGG-AAAA-TACAAAGCACA
genomic: AAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATT-CAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACA
EST: gi|37190343|gb|CF609692.1|CF609692
EST:     CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG                         GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: gi|110712986|gb|EE088512.1|EE088512
EST:     AAAAGATCTTGGGCGCAGACGACATTATCCGGGTTTCCACGAATAATCAG                         GATCTAGACGAAGAAGT
genomic: AAAAGATCTTGG-CGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGT