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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgtggccaatcttttatctttgtttgatcttatcattcatatgacatatttactttttagaactggatataggctacaatgatg...

Basic information

species Vitis vinifera
transcript Vv16s0098g01040.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgaga-------gtatattttttgtggccaatcttttatctttgtttgatcttatc--------attcatatga-catatttactttttagaactggatataggctacaatgatg-----------
|||||| | |||| |||||||  ||||||| |||||||| || || ||||| || ||||||||||| |||||||||||||||||||||||| |||| ||||| ||        | | | ||  |||           | || || ||   ||||||         ||| ||   |  |  | |||   | |   ||  |    |||  | ||  |            
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag

upper sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G14030.2 (Glycine max), 5'ss of exon 7
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgt--ggccaatcttttatctttgtttgat--cttatcatt-catatgacatatttactttttagaactggatataggctacaatgatg----------
|||| |||   || | ||||| |||||||| ||||| ||  ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |  || | || |||||  |      || |||  |||    |||   | | ||    |  ||| | ||  |  | || |  ||| |  ||    ||  || |           
TGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGgtaat-gtttcttctttgttagagttgcctattacatttaaaagatgattgaccagagtagctgata-atgcatctctttggtctg-acctatctaacggtgctatatttctcag

upper sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgtg--gccaatcttttatctt------tgtttgatcttatcattcatatgacatat-ttactttttagaactggatataggctacaatgatg
|||| ||||  || | || || |||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| || || |||||||||||||| |||||     | | |  ||  ||  ||| ||    | | ||      ||  ||| | ||     |  |  |    |  ||| |||   |    | | ||     ||      
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctacctttctaatggtgctgtatttctcag-----

upper sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgtg--gccaatcttttatctt------tgtttgatcttatcattcatatgacatat-ttactttttagaactggatataggctacaatgatg
|||| ||||  || | || || |||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| || || |||||||||||||| ||||| |   | |  | ||  ||  ||| ||    | | ||      ||  ||| | ||     |  |  |    | |||| |||   |    | | ||     ||      
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaactaacaatgcttgttacctttctaatggtgctgtatttctcag-----

upper sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G35640.1 (Glycine max), 5'ss of exon 6
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgt--ggccaatcttttatctttgtttgatcttatcattcatatgac--atatttactttttagaactggatataggctacaatgatg----------
     |||   || | ||||| |||||||| ||||| ||  ||||||||||||||||||||||||| ||||  |||||||| |||||||||||||| ||||| |  || | || |||||  |      || |||  |||    |||  | | | |    |  |  ||| |   | | |       ||  ||    |   || |           
-----TGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGTCCCTGTTAATCCAACATTTTTGCCCAGGGTAAT-

upper sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G40760.1 (Glycine max), 5'ss of exon 7
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgt--ggccaatcttttatcttt----gtttgatcttatcattcatatgacatatttactttttagaactggatataggctacaatgatg-----
|||| |||   || | ||||| |||||||| ||||| ||  ||||||| |||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| |  || | || |||||  |      || |||  |||    | |||| |  |  |     || |   || || ||| |   ||       | | | | ||  |      
TGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTACTACCTTCGAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGgtaat-gtttcttctttgttagagttgcctattacatttagaagattgaccagagtagctg-ataatgcatctattttgtctgacctatctaatggtgctatatttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110394549|gb|EC959681.1|EC959681
EST:     TACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGG                         TCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT
genomic: TACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtat ... tgtcatccagTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT
EST: gi|254917332|gb|GR906158.1|GR906158
EST:     ACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGG                         TCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT
genomic: ACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtat ... tgtcatccagTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT
EST: gi|110406292|gb|EC971861.1|EC971861
EST:     TACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGG                         TCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT
genomic: TACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtat ... tgtcatccagTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT
EST: gi|110385680|gb|EC950225.1|EC950225
EST:     TACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGG                         TCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT
genomic: TACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtat ... tgtcatccagTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATT