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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTACTTCCAGAGCATTTGGGACCATGCACTCTTAGGATTACATTTTCTGCACACACAGATTTGAGTGTGAAATTCCAAAGCCACCGCAGCAGgtattactgatttataattcttttggtatatgagtgtattgcattgggccgttttggtatccaggttcaagtattggtttctgtgtttacaagttctctt...

Basic information

species Vitis vinifera
transcript Vv16s0050g02640.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698414|gb|EE075888.1|EE075888
EST:     TTTTCTGCGCACACAGATTTGAGTGTGAAATTCCAAAGCCACCGCAGCAG                         GGACTACACTAACCCTTATCTTCCTGTTGCTTCATCAGCCATAGATGGAAG
genomic: TTTTCTGCACACACAGATTTGAGTGTGAAATTCCAAAGCCACCGCAGCAGgtattactga ... caaaattcagGGACTACACTAATCCTTATCTTCCTGTTGCTTCATCAGCCATAGATGGAAG
EST: gi|33404632|gb|CF210259.1|CF210259
EST:     TTTTCTGCGCACACAGATTTGAGCGTGAAATTCCAAAGCCACCGCAGCAG                         GGACTACACTAACCCTTATCTTCCTGTTGCTTCATCAGCCATAGATGGAAG
genomic: TTTTCTGCACACACAGATTTGAGTGTGAAATTCCAAAGCCACCGCAGCAGgtattactga ... caaaattcagGGACTACACTAATCCTTATCTTCCTGTTGCTTCATCAGCCATAGATGGAAG
EST: gi|110694551|gb|EE071754.1|EE071754
EST:     TTTTCTGCGCACACAGATTTGAGTGTGAAATTCCAAAGCCACCGCAGCAG                         GGACTACACTAACCCTTATCTTCCTGTTGCTTCATCAGCCATAGATGGAAG
genomic: TTTTCTGCACACACAGATTTGAGTGTGAAATTCCAAAGCCACCGCAGCAGgtattactga ... caaaattcagGGACTACACTAATCCTTATCTTCCTGTTGCTTCATCAGCCATAGATGGAAG