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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCTTTACAAGTTATTTTATGACCAGACTGATCAAGGGATGACTCATTTTCTCTTGAATCTGATCAAATCCTTCGACTCTCATAAACAACCCAAAAGgttcccctttgatttcaacaacttagaagttcattgttgatgacgatgttgttatatttattattactacaactaatttaatgagcaattattgttatta...

Basic information

species Vitis vinifera
transcript Vv16s0050g02160.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02160.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G30420.1 (Glycine max), 5'ss of exon 9
TCCTTCTTTACAAGTTATTTTATGACCAGACTGATCAAGGGATGACTCATTTTCTCTTGAATCTGATCAAATCCTTCGACTCTCATAAACAACCCAAAAGgttc--ccctttgatttcaacaacttagaag--ttcattgttgatgacgatgttgttatatttattattactacaactaatttaatgagcaattattgttatta
| ||| | ||||||||||||||||| ||||||||  ||||||||||||| || || |||||| |||| ||| |||| ||| | || |||||||||||||||||   ||  || |||  |||||   | ||   ||||       | |  |||    |||||  |||  |  |   |    || ||   | |  | ||   |   
TACTTTTGTACAAGTTATTTTATGATCAGACTGAGGAAGGGATGACTCAGTTCCTATTGAATTTGATTAAAACCTTTGACACCCACAAACAACCCAAAAGgtttgacctctttattctaacaaagaaaaaaaattcacataccttaatcatgaacatatatggattgcttttttcatgtcttaaacttgta--tcttagcag--

upper sequence: Vv16s0050g02160.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G37220.1 (Glycine max), 5'ss of exon 10
TCCTTCTTTACAAGTTATTTTATGACCAGACTGATCAAGGGATGACTCATTTTCTCTTGAATCTGATCAAATCCTTCGACTCTCATAAACAACCCAAAAGgttc--ccctttgatttcaacaacttagaagttcattgttgatgacgatgttgttatatttattattactacaactaatttaatgagcaattattgttatta
| ||||| ||||||||||||||||| ||||| ||  ||||||||||||| || || |||||| |||| ||| |||| |||   || || ||||||||||||||   ||  || |||  ||||    | ||  |||   ||  | |  |||    |||||  ||   |  |   |    || ||   | |  | | |      
TACTTCTGTACAAGTTATTTTATGATCAGACCGAGGAAGGGATGACTCAGTTCCTATTGAATTTGATTAAAACCTTTGACATCCACAAGCAACCCAAAAGgtttgacctctttattctaacagaaaaaaaagtcacatttcttaatcatgaacatatatggatggcttttttcatgtcttaaacttgtatct-tagcagcc-

upper sequence: Vv16s0050g02160.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G52910.1 (Arabidopsis thaliana), 5'ss of exon 8
TCCTTCTTTACAAGTTATTTTATGACCAGACTGATCAAGGGATGACTCATTTTCTCTTGAATCTGATCAAATCCTTCGACTCTCATAAACAACCCAAAAGgttcccctttgatttcaacaacttagaagttca--ttgttgatgacgatgttgttatatttattat-tactacaactaatttaatgagcaattattgttatta
|| | || || ||||| |||||||||||||||||||||||||||  ||| ||  || |||||||| | | |   || ||| | || || ||||| || |||||  ||| ||  |||     |||| || | ||   | ||| || | |||| ||    |  | ||| |  ||||  ||||||  ||   |  | |   |  | 
TCTTGCTGTATAAGTTGTTTTATGACCAGACTGATCAAGGGATGTGTCAGTTCATCCTGAATCTGGTGAGAAGTTTTGACACGCACAAGCAACCTAAGAGgttggcctctg-cttctgtttcttataattccagaattttgctgtc-atgtagtatcttgcaatatgtgatacatataatttg-tgtaaacctgtatatgctt