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CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctcatatttcatgttgttagaaactactttgtaaataagttttattggtaccaaacatttaggaatggactagtgattatctaatgcccaagaa...
species | Vitis vinifera |
transcript | Vv16s0050g01510.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTTCCTGGTGATGTTGCATATCATTTTCAAC-TCGCTTATTTGGNAAAG ATAATACC-GACAAGTGTAGATATGAAGTATTGGTCA-CCAAA-TTGAAAEST: gi|71859342|gb|DT008397.1|DT008397
genomic: TGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGG-AAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTG-TCAACCAAAATTGAAA
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|29782866|gb|CB348559.2|CB348559
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|29783203|gb|CB349232.2|CB349232
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|110694395|gb|EE071465.1|EE071465
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG A-AATACCCGACAAGTGTAGATATGAAGTATTGTTCA-CCAAA-TTGAAATEST: gi|110421576|gb|EC987874.1|EC987874
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGT-CAACCAAAATTGAAAT
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|110686508|gb|EE064228.1|EE064228
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|32271506|gb|CD720665.1|CD720665
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATACCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|46917631|gb|CN546960.1|CN546960
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|110729024|gb|EE105164.1|EE105164
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACNAGTGTAGATATGAAGTATTGTCACCCAAAATTGAA-TCEST: gi|28969441|gb|CB348474.1|CB348474
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|110364112|gb|EC927758.1|EC927758
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|77581747|gb|DV219826.1|DV219826
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|110687406|gb|EE064790.1|EE064790
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATEST: gi|110693950|gb|EE070628.1|EE070628
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGAT
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATA-TACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTTGAA-TEST: gi|110711614|gb|EE088295.1|EE088295
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATT-GAAAT
EST: TGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAAG ATA-TACC-GACNAGTGTAGAEST: gi|32249238|gb|CD715057.1|CD715057
genomic: TGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAA-Ggtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGA
EST: ATGTTCCTGGTGATGTTGCATACCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|110732977|gb|EE108734.1|EE108734
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: TGTTTCTGGTGATNGT-GCATATCATTTTCAACCTCGCTTATTTGGAAAG A-AATACCCCGACA-GTGTAGATATGAAGTATTGTCAACCAAAATTGAAATEST: gi|110723197|gb|EE100235.1|EE100235
genomic: TGTTCCTGGTGAT-GTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCC-GACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAAT
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATA-TACCCGACNAGTGTAGATATGAAGTATTGTCAACEST: gi|161718657|gb|FC067946.1|FC067946
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAAC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATA-TACCCGACAEST: gi|110383861|gb|EC948264.1|EC948264
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACA
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|110426741|gb|EC993160.1|EC993160
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAG ATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCEST: gi|71873209|gb|DT022264.1|DT022264
genomic: ATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATC
EST: TGTTCCTGGTGATGTTGCATATCATTTTCAACCCTCGCT-ATTTGGGAAG ATAATACCCGACAAGTGTAGATATGAAG
genomic: TGTTCCTGGTGATGTTGCATATCATTTTCAACC-TCGCTTATTTGGAAAGgtaaggctca ... tgacaaacagATAATACCCGACAAGTGTAGATATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGgtaaggctcatatttcatgttgttagaaactactttgtaaataagttttattggtaccaaacatttaggaatggactagtgattatctaatgcccaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacta
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaaaca