1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAACTGTTCATGTTAGTAAGGAGTGAGTTAAACTTGGACCTTAAGAACATTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAGgtaatttgttcaccaagttttggctatataaagcagttaaagatcagcgtcttagtctttaatgaagcatcagcttcttacttctttgccttttcctttcag
species | Vitis vinifera |
transcript | Vv16s0050g01460.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAG AAAGAATTGTTGATTCGGGCGCCATTAACTCGTGAATCAEST: gi|30297567|gb|CB974361.1|CB974361
genomic: TTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAGgtaatttgtt ... ttcctttcagACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCA
EST: GCATCCATCACTAGTTAAG ACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCAGCAACCTTATCAEST: gi|351040685|gb|FQ438229.1|FQ438229
genomic: GCATCCATCACTAGTTAAGgtaatttgtt ... ttcctttcagACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCAGCAACCTTATCA
EST: TAAGCAAGAGCAGGCAAAGTTTTGGAAGCCACC-TCCATCAATAGT-AAG ACAGAATTGTTGATTCAEST: gi|161720446|gb|FC070213.1|FC070213
genomic: TAAGCAAGAGCAGGCAAAGTTTTGGAAGC-AGCATCCATCACTAGTTAAGgtaatttgtt ... ttcctttcagACAGAATTGTTGATTCA
EST: TTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAG ACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCAGCAACCTTATCAEST: gi|29782441|gb|CB347748.2|CB347748
genomic: TTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAGgtaatttgtt ... ttcctttcagACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCAGCAACCTTATCA
EST: TTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAG ACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCAGCAACCTTATCA
genomic: TTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAGgtaatttgtt ... ttcctttcagACAGAATTGTTGATTCAGGCGCAATTAACTCGTGAATCAGCAACCTTATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACTGTTCATGTTAGTAAGGAGTGAGTTAAACTTGGACCTTAAGAACATTAAGCAAGAGCAGGCAAAGTTTTGGAAGCAGCATCCATCACTAGTTAAGgtaatttgttcaccaagttttggctatataaagcagttaaagatcagcgtcttagtctttaatgaagcatcagcttcttacttctttgccttttcctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG