Sequence
atgc intronic sequence ATGC exonic sequenceCTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattcttttgaaacctacaccattttgattcttgtatgtaatgtagtagacttgtcatgttgggtaactcttggcacagaataatgcttaatttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g45670.1 (Oryza sativa), 5'ss of exon 6
CTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgt--attcttttgaaacctacaccattttgattcttgtatgtaatgtagtagacttgtcatgttgggtaactcttggcacagaataatgcttaatttc
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TTTTGCACAAGTATACAGCTTCTTGGGCAGCGTTTTCGATCCAAGCACAAGTGGCCATTTACAGAAACTAAAGGAGATGAATCCAATTGATGTTGAGACGgtatgtgaatcatggataagctttgttctgctcagttaaagtata-attgtacgtgacaagtcaagacaactgaaacataagcataaagaatgttctttgt-
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g01670.1 (Oryza sativa), 5'ss of exon 6
CTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattcttttga---aacctacaccattttgattcttgtatgtaatgtagtagacttgtcatgttgggtaactcttggcacagaataatgcttaatttc
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CTTTGCTCAAGTATACAACTTCCTGGGAAGCATATTTGATCCAGAGACAAGTGGGCATCTTCAGAGGTTGAGAGAGATGGATCCAATCGATGTTGAAACAgtatgcccttctctaagcgatcgtgtgtgtgtttttttttttttgctatagtgttactctgttcatgtcaatatgtagactatctacaatagtgct--attt-
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G30250.1 (Glycine max), 5'ss of exon 6
CTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattcttttgaaacctacaccattttg---attcttgtatgtaatgtagtagacttgtcatgttgggtaactcttggcacagaa-taatgcttaatttc
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TTTTGCCGAAGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATGTACAGAAACTAAAAAGGATGGACCCTATAGATGTTGAGACGgtacgtacatgttagtatgttttctttttttgtcaatgactctttcctat-tcttccttttgacagtctagtcgttttttcattttcttctagctattaat---
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G24400.1 (Glycine max), 5'ss of exon 6
CTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattcttttgaaacctacaccattttgattcttgtatgtaatgtagtagacttg-tcatgttgggtaactcttggcacagaataatgcttaatttc-----
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TTTTACTGAGGTATACGGCTTCATTGGCAGTTTGTTTGACCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGTATAGATGTTGAGACGgtatgtatctgttctttcactccaatattt--gctgttctgttcagc----tagattggattctgttatagatactttgtagcaaattggtttttaatatgcatca
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G29740.1 (Glycine max), 5'ss of exon 6
CTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattcttttgaaacctacaccattttgattcttgtatgtaatgtagtagacttgtcatgttgggtaactcttggcacagaataatgcttaatttc--------------------------------------------------------------------------------------------
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TTTTACTCAGGTATATGGCTTCATTGGCAGTGTATTTGACCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGCATAGATGTTGAGACGgtatgtctatgttcctccactccaatattt--gctattctgctcagctagattggattctgttatagatactccttaagttgacattaaagctttatttgaacctgacttattgactagtgtctactacaattgtataaatgactttatgcttgttcaaaagtacttacaaaatgtccttggctgtttttag
upper sequence: Vv16s0050g01180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G37520.1 (Glycine max), 5'ss of exon 6
CTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattcttttgaaacctacaccattttg---attcttgtatgtaatgtagtagacttgtcatgttgggtaactcttggcacagaa-taatgcttaatttc
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TTTTGCTGAAGTATACAACTTCATTGGCAGTGTATTTGATCCAAATATAACTGGACATGTACAGAAACTAAAAAGGATGGACCCTATAGATGTTGAGACGgtacgtagatgttagtgtgttttctttttttgtcaatgactctttcctat-tcttccttttgacagtctaatcattttttcattttcttctagcaattaat---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32269462|gb|CD718621.1|CD718621EST: CTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACA GTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTT
genomic: CTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattc ... ttctgtccagGTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAgtatgtattcttttgaaacctacaccattttgattcttgtatgtaatgtagtagacttgtcatgttgggtaactcttggcacagaataatgcttaatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataa