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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGTGACTTTGGATTTGCACGTGCAATGTCCACAAATACGGTTGTTTTACGATCCATAAAAGgtttggctcatctcaatgctatcagtatagtttgcctttttagtttgaaaccgttatcactgagccatagaaaattagttacaaatttctgactctgcctatcactcaatcatgctttgatcaatattttcag

Basic information

species Vitis vinifera
transcript Vv16s0039g02400.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 6
CTTTGTGACTTTGGATTTGCACGTGCAATGTCCACAAATACGGTTGTTTTACGATCCATAAAAGgtttggctcatctcaat-gctatcagtatagtttgcctttttagtttgaaaccgttatcactgagccatagaaaattagttacaaatttctgactctgcctatcactcaatcatgctttgatcaatattttcag
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CTTTGTGATTTTGGGTTTGCACGTGCAATGTCCACAAATACAGTTGTTTTGCGATCTATAAAAGgtttggcttatcaaaattgattttgttgcttttggaatcttaactgtagcaatgtagctgcttgtactttgaggatttgttctacagt-------ctgcatat-actttgacatagtatgttttacag------

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 6
CTTTGTGACTTTGGATTTGCACGTGCAATGTCCACAAATACGGTTGTTTTACGATCCATAAAAGgtttggctcatctcaatgctatcagtatagtttgcctttttagtttgaaaccgttatcactgagcca-tagaaaattagttacaaatttctgactctgcctatcactcaatcatgctttgatcaatattttcag
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CTTTGTGATTTTGGGTTTGCGCGTGCAATGTCCACAAATACAGTTGTTTTGCGATCTATAAAAGgtttggcttatcagaat----tgattttg--ttgcttttggaatct-aaactgtagcaatgtagctgcttgtactttgaggatttgttctacagtctgcatatattttga-catggtatgttttacag------