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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGCAGATTCTTCACCGGCAACGGTTCCCTTGCCCCTTCGTGTTGAGCCCAAGCCAAAGAGTGGGATTAGgtttatcactactcctttctcatttacacccacaacacctttctttaagtgccttctctgctctaatctaagtgattatctaaattgcag

Basic information

species Vitis vinifera
transcript Vv16s0039g00280.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g00280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G73350.2 (Arabidopsis thaliana), 5'ss of exon 5
-----------TTTAGCAGATTCTTCACCGGCAACGGTTCCCTTGCCCCTTCGTGTTGAGCCCAAGCCAAAGAGTGGGATTAGgtttatcactactcctttctcatttacacccacaacacctttctttaagtgccttctctgctctaatct-aagtg-attatctaaattgcag
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AAAGCTGCAACCCAAGCTGATTCATCTCCAGCATCTATTCCCTTGCCACTTCGTGTGGAGCCCAAACCAAAGAGTGGTATCAGgtggaaaatcccttcctttccacct-tattcacaccatgaat-tggattttcattcggtgaccaacttttgtgtgtgttttccaatgtctag