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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCTGGCTCGAAACCAGCTTACGGGTGAGATACCAAGGCTAATCTACTGGAATGAAGTATTGCAATACCTgtaagtaatagccgaatccaaatatagtcagaattaagaaccttgattctataattccaccagtaatggagtttaggttatggtaggagcctttgatatatttcagtgtttctcatattgaatatacaactgtgctgcttcatccatttgttttgtttaacttcacag

Basic information

species Vitis vinifera
transcript Vv16s0022g02030.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 5'ss of exon 6
TGACCTGGCTCGAAACCAGCTTACGGGTGAGATACCAAGGCTAATCTACTGGAATGAAGTATTGCAATACCTgtaagtaatagccgaatccaaatatagtcagaattaagaaccttgattctataattccaccagtaatggagtttaggttatggtaggagcctttgatatatttcagtgtttctcatattgaatatacaactgtgctgcttcatccatttgttttgtttaacttcacag
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GGACCTGGCACAGAACCAGCTTACAGGCGATATCCCAAGGCTCATATACTGGAATGAAGTTCTGCAATACCTgtaag---------aatcc---tataa--------aagaaaattgtctaactgttttagctggtagtataag--aaggtatttttcaggcatta---acactttgcttctcttaatcttcag----------------------------------------------

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G082855_T03 (Zea mays), 5'ss of exon 6
TGACCTGGCTCGAAACCAGCTTACGGGTGAGATACCAAGGCTAATCTACTGGAATGAAGTATTGCAATACCTgtaagtaatagccgaatccaaatatagtcagaattaagaaccttgattctataattccaccagtaatggagtttaggttatggtaggagcctttgatatatttcagtgtttctcatattgaatatacaactgtgctgcttcatccatttgttttgtttaacttcacag
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GGATCTGGCGCAGAACAAACTTACCGGCGACATCCCCAGGCTCATCTACTGGAATGAAGTACTACAATACCTgtaagagctcgac--atcaatttgttttgcccactgcagaagatgttttcg-ggtgataacatttctgttatcttggttccc-cag----------------------------------------------------------------------------------

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G07180.1 (Arabidopsis thaliana), 5'ss of exon 7
TGACCTGGCTCGAAACCAGCTTACGGGTGAGATACCAAGGCTAATCTACTGGAATGAAGTATTGCAATACCTgtaagtaatagccgaatccaaatatagtcagaattaagaaccttgattctataattccaccagtaatggagtttaggttatggtaggagcctttgatatatttcagtgtttctcatattgaatatacaactgtgctgcttcatccatttgttttgtttaacttcacag
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TGACCTCGCAAGAAACCAGCTTACTGGTGAGATACCAAGGTTACTCTACTGGAATGAAGTTTTACAGTATCTgtaagtagttc----atctacttatc-ttaagtctaggcatccagagatttatgttctgattgtgatgta-ttcattttgcag-------------------------------------------------------------------------------------