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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATATCCATAAACGTGGTGGCACCTTTCTTCGTACTTCCCGAGGGGGTCATGATACCGACAAGATAGTTGATAATATTCAGGACCGGGGTATAAATCAGgtggatctctgtttccctttttcctaccacctaggttgctgaagtttggtagtttattagaaaatctgatctcttttagggatccag

Basic information

species Vitis vinifera
transcript Vv16s0013g01140.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 6
CGATATCCATAAACGTGGTGGCACCTTTCTTCGTACTTCCCGAGGGGGTCATGATACCGACAAGATAGTTGATAATATTCAGGACCGGGGTATAAATCAGgtggatctctgtt---tccctttttcctaccacctaggttgctgaagtttggtagtttattagaaaatct------gatctcttttagggat-ccag
| ||||||||||| ||||||| |||||||||||||| || || || || ||||||||| |||||||||| ||||| ||| |||||||||| |||||||||||| ||   ||||   |    ||    |      ||  || ||  |  |||      |  ||   || |       ||| |  | || |  |   ||
CCATATCCATAAATGTGGTGGAACCTTTCTTCGTACATCTCGTGGAGGACATGATACCCACAAGATAGTAGATAACATTGAGGACCGGGGAATAAATCAGgtgtatacttgttaaattttattcattttttctttaattttctataaattgtggacatgatatctaaaccaaaggagatttgatctatgtgtgttag

upper sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G61580.1 (Arabidopsis thaliana), 5'ss of exon 5
CGATATCCATAAACGTGGTGGCACCTTTCTTCGTACTTCCCGAGGGGGTCATGATACCGACAAGATAGTTGATAATATTCAGGACCGGGGTATAAATCAGgtgg-----atctctgtttcccttttt---cctaccacctaggttgctgaagtttggtagtttattagaaaatctgatctcttttagggatccag-----
|||||| |||||||| |||||||| |||||||  || ||  |||| || |||||||| |  ||||| |||||||||||||| ||  | || ||||||||||| |     ||  ||| || || ||||   | ||     || || | | |  ||   | |    | ||  |  || || | || |     |  |      
CGATATTCATAAACGCGGTGGCACTTTTCTTCAAACCTCAAGAGGAGGACATGATACAGCGAAGATTGTTGATAATATTCAAGATAGAGGAATAAATCAGgtagctaacataactgatttccattttgtccataatttttatgtagtttagtttgtattgaagctgagccatcctaatattttgtcaatgtgtatgtcag