1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTGGAGGAGCAGTTGGAGTGATCTCAGCCTTGATGGTCGTTGAAATAAACAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTGgtatgcattttggggtctctcatttcaagacggccaagttttaggtttctcttatgccttttaatgtcttgttttaaagtggttgttttagtttatgcat...
species | Vitis vinifera |
transcript | Vv16s0013g00290.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTG GATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATTGEST: gi|27586835|gb|CB009530.1|CB009530
genomic: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTGgtatgcattt ... attgatacagGATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATTG
EST: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTG GATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATTGEST: gi|29782311|gb|CB347518.2|CB347518
genomic: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTGgtatgcattt ... attgatacagGATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATTG
EST: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTG GATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATCGEST: gi|110361480|gb|EC924954.1|EC924954
genomic: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTGgtatgcattt ... attgatacagGATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATTG
EST: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTG GATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATCG
genomic: CAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTGgtatgcattt ... attgatacagGATACCTTGCATGTGCCCGCTGTTCAAGCACAGGAGCACTTGTTCTTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGAGGAGCAGTTGGAGTGATCTCAGCCTTGATGGTCGTTGAAATAAACAACGTAAAACAGCAGGAGAATAAAAGATGCAAATACTGTCTTGGAACTGgtatgcattttggggtctctcatttcaagacggccaagttttaggtttctcttatgccttttaatgtcttgttttaaagtggttgttttagtttatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG