1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAATCTGGTCAAAGCAAACGGGATTTTGGATTCATCCATTTTGCTGAAAGGTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttctcacaccaaggttgtctgaaaatttaaatgagggacaagactattctagatggggctgaactgttctctagactccctgaacagccccctc...
species | Vitis vinifera |
transcript | Vv15s0048g02700.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCGAGTGCATTGAACGCTGTCAAGGATACAGAGAAACATGAAATTGATG GCCAGGCATTG-ACATTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTGEST: gi|351033373|gb|FQ446605.1|FQ446605
genomic: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttct ... tgaaccacagGCCAGGCATTGGACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTG
EST: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATG GCCAGGCATTG-ACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTGEST: gi|351014469|gb|FQ437471.1|FQ437471
genomic: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttct ... tgaaccacagGCCAGGCATTGGACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTG
EST: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATG GCCAGGCATTG-ACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTGEST: gi|349829473|gb|FQ420005.1|FQ420005
genomic: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttct ... tgaaccacagGCCAGGCATTGGACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTG
EST: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATG GCCAGGCATTG-ACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTGEST: gi|351044546|gb|FQ443077.1|FQ443077
genomic: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttct ... tgaaccacagGCCAGGCATTGGACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTG
EST: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATG GCCAGGCATTG-ACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTGEST: gi|351041038|gb|FQ443814.1|FQ443814
genomic: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttct ... tgaaccacagGCCAGGCATTGGACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTG
EST: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATG GCCAGGCATTG-ACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTG
genomic: GTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttct ... tgaaccacagGCCAGGCATTGGACGTTTCCCTTGCTAAGCCTCAGAGTGATAAAAAGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCTGGTCAAAGCAAACGGGATTTTGGATTCATCCATTTTGCTGAAAGGTCGAGTGCATTGAAGGCTGTCAAGGATACAGAGAAACATGAAATTGATGgtacttttctcacaccaaggttgtctgaaaatttaaatgagggacaagactattctagatggggctgaactgttctctagactccctgaacagccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggacaa