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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCCGTGCACTTAACTACATGCACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagcttttcttgagtatgaagaaagtgaaggtggaagttatgatttatgctgcaattattgtctcattagtagtatgtggtgataatcttgttctttgtattacattcatgttaaaatggtaaatttgttatctatatcttgtcaaagtatttaggttttgtggttttgatgcatgccgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g02010.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 5
ATCTGCCGTGCACTTAACTACATGCACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagcttttcttgagtatgaagaaagtgaaggtggaagttatgatttatgctgcaattattgtctcattagtagtatgtggtgataatcttgttctttgtattacattcatgttaaaatggtaaatttgttatctatatcttgtcaaagtatttaggttttgtggttttgatgcatgccgcag
|| |||||  | ||    ||||| ||| | |  ||||||||||| || |||||||||||||| || |||||||||||| |   | |||  ||     ||  ||  |  || |  |||    || || || || ||  |                                                                                                                         
ATATGCCGATCTCTCGCTTACATCCACGGCGGGATTGGGGTCTGCCACCGTGATATCAAGCCACAAAATTTATTGgtaggaggtcctt--gtcctttgagggttgatttgtac-ttactgcttttgttgtaagtacag-------------------------------------------------------------------------------------------------------------------------

upper sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 5
ATCTGCCGTGCACTTAACTACATGCACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagcttttcttgagtatgaagaaagtgaaggtggaagttatgatttatgctgcaattattgtctcattagtagtatgtggtgataatcttgttctttgtattacattcatgttaaaatggtaaatttgttatctatatcttgtcaaagtatttaggttttgtggttttgatgcatgccgcag
|| |||||  | ||    ||||| ||| | |  ||||| ||||| || |||||||||||||| || |||||||||||| |   | ||||    |        |     | | | |||    || || || || ||  |                                                                                                                         
ATATGCCGATCTCTCGCTTACATCCACGGCGGGATTGGAGTCTGCCACCGTGATATCAAGCCACAAAATTTATTGgtaggaggtccttgtccttaggattgat-----ttgtacttactgcttttgttgtaagtacag-------------------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349820373|gb|FQ403989.1|FQ403989
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: gi|110688693|gb|EE067533.1|EE067533
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: gi|32249937|gb|CD715756.1|CD715756
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: gi|161713339|gb|FC063356.1|FC063356
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: gi|351026191|gb|FQ428203.1|FQ428203
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATTCCCAGACTC
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTC
EST: gi|71856597|gb|DT005652.1|DT005652
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: gi|110732276|gb|EE107431.1|EE107431
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: gi|27579903|gb|CB002598.1|CB002598
EST:     ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG                         GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG