Sequence
atgc intronic sequence ATGC exonic sequenceCGATACAATTCGAGAAACATCGGTTGCACCAACATTTGTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAGgtagcgtatatacatctcttagccttctttacatagttctaacttgttttctttacaattattgagtttttccaagtgggtattcttcccctttagcctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g02000.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G08340.1 (Glycine max), 5'ss of exon 7
CGATACAATTCGAGAAACATCGGTTGCACCAACATTTGTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAGgtagcgt--atatacatctcttagccttctttacatagttcta--acttgttttctttacaattattgagtttttccaagtgggtattcttcccctttagcctt
|||| || ||||||| |||| ||||| || ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||||| | | |||| | ||| || | || || | || | | | | | || || || | | | |
AGATAGCATCCGAGAAAGTTCGGGAGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCCAATGGTTACTCCAAGgtaaaatccaaatactctttctagtttttagtttgggatttggctaccttttctgtctttagagaacaagggacaataataaattaataattatttctga----
upper sequence: Vv15s0048g02000.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G01860.1 (Glycine max), 5'ss of exon 6
CGATACAATTCGAGAAACATCGGTTGCACCAACATTTGTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAGgtagcgtatatacatctctta-gccttctttacatagttctaacttgttttctttacaattattgagtttttccaagtgggtattcttcccctttagcctt
|||| || |||||| || | ||||| || ||||||||| | ||||||||||||||||| || || |||||||||||||||||||| || ||||||||| || || || | | || | | || | || || || ||| || ||| || | || | | | |
AGATAGCATCAGAGAAAGTTCAGGAGCACCCACTTTTGTGAACGGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCCAATGGTTATTCCAAGgtaattaat-taaattgcaaatgcactttctagttttttactttttcgttagtttgggatgattctattctaattctataataattaatgctgaaaaaatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352782501|gb|FQ470404.1|FQ470404EST: GGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAG GTTACATGGGTTGAGCATGCANAATACGATGAGAGTGCAGTCCACCAGCTC
genomic: GGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAGgtagcgtata ... tgaaatgcagGTTACATGGGTTGAGCATGCAGAATACGATGAGAGTGCAGTCCACCAGCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGATACAATTCGAGAAACATCGGTTGCACCAACATTTGTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAGgtagcgtatatacatctcttagccttctttacatagttctaacttgttttctttacaattattgagtttttccaagtgggtattcttcccctttagcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcccc