Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGGAACTTGGAAGGCTTTCTGCATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttactgtatgctcttatggttggtagactagaaaagtttttccttccttcctttcacttctattgtgcattgatcatctatggtcttggtattatgacaccag

Basic information

species Vitis vinifera
transcript Vv15s0048g01890.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G46140.3 (Glycine max), 5'ss of exon 7
CTTGGGGAACTTGGAAGGCTTTCTGCATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtt--tactgtatgctcttatggttggtagactagaaaagttt--ttccttccttcctt--tcacttctattgtgcattgatcatctatggtcttggtattatgacaccag
|||||||| ||||||||||||||| |||||||||||||||||||||| || || |||   |   |||||||| | |||||||  |  |   ||  | ||   |    | |||       |||  || |||    |  |  |  | |   || || ||   | ||  ||   ||   ||| ||| |  |||
CTTGGGGAGCTTGGAAGGCTTTCTTCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATATGATgtatgttgttgatccttgtgcataaattcttcaaactttctggttttggtttctttggactgtgattgccttccttttgtatgtgt-attcatcacctatatat-atggctgcag

upper sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G40060.2 (Glycine max), 5'ss of exon 6
CTTGGGGAACTTGGAAGGCTTTCTGCATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttactgtatgctcttatggttggtagactagaaaagtttttccttccttcctttcacttctattgtgcattgatcatctatg-gtcttggt-----at-tatgacaccag
|||||||| |||||||| || |||||||||||||||||||||||||| || || |||   |   |||||||  | |||||||  |  |    |||| ||| |       |  ||   | | |  |   || ||||    | |  | ||| ||  |  | |||| || |||||     || |||| |  |||
CTTGGGGAGCTTGGAAGACTCTCTGCATCAATGAAGAAGTTAGAGAAAGATCTCAAGAACAAGAATAAATACGATgtatgttatccat----tcttgtggataaattcttcaaactttctgttatgggtttctttggactgtgat-tgccttacttttgtatgtgtattggttacctatatatggctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51052191|gb|CO819435.1|CO819435
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110685319|gb|EE063602.1|EE063602
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|27585704|gb|CB008399.1|CB008399
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAA-TGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|161718258|gb|FC066959.1|FC066959
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30321725|gb|CD004987.1|CD004987
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTC
EST: gi|30256397|gb|CB972240.1|CB972240
EST:     TCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATAGATCGA                         --TGAGCAGTACCGCAGTAAACTCAAAAAA
genomic: TCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATA--TCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAA
EST: gi|32244996|gb|CD710815.1|CD710815
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|34543960|gb|CF512192.1|CF512192
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30254158|gb|CB971173.1|CB971173
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30256477|gb|CB972320.1|CB972320
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|83274903|gb|DV938999.1|DV938999
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|32457484|gb|CD798658.1|CD798658
EST:     TGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: TGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|22011190|gb|BQ796224.1|BQ796224
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110701786|gb|EE079758.1|EE079758
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|26264448|gb|CA815511.1|CA815511
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30255822|gb|CB971954.1|CB971954
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110413573|gb|EC979363.1|EC979363
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|33408964|gb|CF214591.1|CF214591
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTCCCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30326206|gb|CD009468.1|CD009468
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTC
EST: gi|26263259|gb|CA814322.1|CA814322
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|33408880|gb|CF214507.1|CF214507
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30253808|gb|CB971093.1|CB971093
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30128631|gb|CB913970.1|CB913970
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|18459069|gb|BM437358.1|BM437358
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|45771471|gb|CN007323.1|CN007323
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|32269651|gb|CD718810.1|CD718810
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAN                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|161716547|gb|FC066220.1|FC066220
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAA-TCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|28961058|gb|CB340537.1|CB340537
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|18458719|gb|BM436997.1|BM436997
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|27584695|gb|CB007390.1|CB007390
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|26257001|gb|CA808064.1|CA808064
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|156735526|gb|EV239647.1|EV239647
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|34544048|gb|CF512280.1|CF512280
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110687531|gb|EE065043.1|EE065043
EST:     ATCAATGAAGAAGTTAGAGAAGGAGCTTANNGGTAGTGANTAA-TATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCCAATGCTCGGTCACTGGCC
genomic: ATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGA-TAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|161718317|gb|FC067266.1|FC067266
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|22012360|gb|BQ797394.1|BQ797394
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30256179|gb|CB972022.1|CB972022
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|32245233|gb|CD711052.1|CD711052
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTGCCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110360051|gb|EC922598.1|EC922598
EST:     GCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: GCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|29784482|gb|CB345278.2|CB345278
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|26258151|gb|CA809214.1|CA809214
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30131945|gb|CB917284.1|CB917284
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCANATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110730254|gb|EE107122.1|EE107122
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|46910256|gb|CN545631.1|CN545631
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|26264426|gb|CA815489.1|CA815489
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110699462|gb|EE076482.1|EE076482
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110694713|gb|EE072070.1|EE072070
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|32272185|gb|CD721344.1|CD721344
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|45771661|gb|CN007513.1|CN007513
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|27583486|gb|CB006181.1|CB006181
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110697675|gb|EE074871.1|EE074871
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCNAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|77583842|gb|DV220955.1|DV220955
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30129202|gb|CB914541.1|CB914541
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATANATATCAN                         AATGAGCAGTACCGCAGT
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGT
EST: gi|110404214|gb|EC968923.1|EC968923
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|77586244|gb|DV222221.1|DV222221
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110702542|gb|EE081378.1|EE081378
EST:     CATCAATGAAGAAGTTAGAGAACGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|28960193|gb|CB340097.1|CB340097
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110376382|gb|EC941443.1|EC941443
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|161721235|gb|FC070741.1|FC070741
EST:     ATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGGATAAATATCAA                         AAATGAGCAGTACCG
genomic: ATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTG-ATAAATATCAAgtatgtttac ... atgacaccagAA-TGAGCAGTACCG
EST: gi|32460366|gb|CD801540.1|CD801540
EST:     GTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: GTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110360721|gb|EC924050.1|EC924050
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|110370992|gb|EC934673.1|EC934673
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|26265906|gb|CA816969.1|CA816969
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|26266629|gb|CA817692.1|CA817692
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAA                         AATGAGCAGTACCGCAGTAAACTCGAAAAATCAAATGCTCGGTCACTGGCC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTCAAAAAATCAAATGCTCGGTCACTGGCC
EST: gi|30321490|gb|CD004752.1|CD004752
EST:     CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATNAATATCAN                         AATGAGCAGTACCGCAGTAAACTC
genomic: CATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttac ... atgacaccagAATGAGCAGTACCGCAGTAAACTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGGGGAACTTGGAAGGCTTTCTGCATCAATGAAGAAGTTAGAGAAGGAGCTTAAGGGTAGTGATAAATATCAAgtatgtttactgtatgctcttatggttggtagactagaaaagtttttccttccttcctttcacttctattgtgcattgatcatctatggtcttggtattatgacaccag

- - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - GAGCTT