Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttcttttctccacctacttgaaagtaacatttttcacatagagctgttatgctcttttaactatgttggatccttgaaagtgcttcaggtttctt...

Basic information

species Vitis vinifera
transcript Vv15s0048g00900.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 6
GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttcttttctccacctacttgaa-------agtaacatttttcacatagagctgttatgctcttttaactatgttggatccttgaaagtgcttcaggtttctt
||||| || || ||| | || ||| |||| || || |||||||||||   ||| |||||||| |||||||||||||| || ||||||||| |||      ||    ||||  ||       |||||  | |||||||  |   | || |||   ||||   | | | ||  | || || |  | |||       
GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATGTGTTTGCATCGGCAACTGAGAGGGACATCTACACTgtatgtttcaccatctcagtactgcaatcccatcagtaatgtgtttcacaccgtcgtatt-tgccactttactgacgctcgaagcatgcaaatattgcag-------

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G39420.2 (Glycine max), 5'ss of exon 4
GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttcttttctccacctacttgaaagtaacatttttcacatagagctgttatgctcttttaactatgttggatccttgaaagtgcttcaggtttctt
||||||||||||||  | |||||  |||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||| ||| |||  |    | |  ||| |  || || |||||      |||        || |   | |||||||   | |  || | ||               
GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTGTTTTTGCATCTGCAACTGAGAGAGATATATACACCgtaagtttgtg---ctaaatacat--aattaccatttgat-tgtaggatgaacgtg-taactaaactatggatg-tttttaacag---------------

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G60820.2 (Arabidopsis thaliana), 5'ss of exon 6
GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttcttttctccacctacttgaaagtaacatttttcacatagagctg----ttatgctc-ttttaactatgttggatccttgaaagtgcttcaggtttctt----
||| |    || || || || ||  | ||||||||||| || || |||||||| || |||||||| || ||||||||||| ||||||||| ||| |  | |     |  |     || ||      ||| || ||||     || ||||| | | |  |   || | | |    ||||  |  |  | |       
GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTGTAAgttgtcctatttgtgtcttcttttgtcac-cacgccacctaaagcttgcctttgtgctcatatcatttgcatttggttc----aagtcttcaaaatattaccaaa

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G60820.1 (Arabidopsis thaliana), 5'ss of exon 6
GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttcttttctccacctacttgaaagtaacatttttcacatagagct----gttatgctctt-ttaactatgttggatccttgaaagtgcttcaggtttctt
||| |    || || || || ||  | ||||||||||| || || |||||||| || |||||||| || ||||||||||| ||||||||| ||| |  | |     |  |     || ||      ||| || ||||     || ||||| | | |  |   || | | |    ||||  |  |  | |   
GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTGTTTTCGCATCTGCCACAGAGAGGGATATCTACACTgtaagttgtcctatttgtgtcttcttttgtcac-cacgccacctaaagcttgcctttgtgctcatatcatttgcatttggttc----aagtcttcaaaatattac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408415|gb|CF214042.1|CF214042
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110701338|gb|EE078798.1|EE078798
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|32460612|gb|CD801786.1|CD801786
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110714206|gb|EE090847.1|EE090847
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110406409|gb|EC971980.1|EC971980
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATTTTAAATGCTAGCGGAATTCATCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110367163|gb|EC931089.1|EC931089
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110686517|gb|EE064245.1|EE064245
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110731955|gb|EE106817.1|EE106817
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|351056417|gb|FQ454278.1|FQ454278
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|351040709|gb|FQ438253.1|FQ438253
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGACAGGGAAATATACACT                         GGAGACAAGCTGGGAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|351016321|gb|FQ446181.1|FQ446181
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|30133256|gb|CB918595.1|CB918595
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|30329312|gb|CD012574.1|CD012574
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|22008081|gb|BQ793115.1|BQ793115
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACCCT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110708375|gb|EE085848.1|EE085848
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|22011829|gb|BQ796863.1|BQ796863
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCATCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110690363|gb|EE067399.1|EE067399
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|71867003|gb|DT016058.1|DT016058
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110405149|gb|EC970684.1|EC970684
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCATCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110722612|gb|EE098996.1|EE098996
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTTAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110694257|gb|EE071215.1|EE071215
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110688266|gb|EE066618.1|EE066618
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110687257|gb|EE064508.1|EE064508
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110705826|gb|EE083120.1|EE083120
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|30132002|gb|CB917341.1|CB917341
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|77584643|gb|DV221402.1|DV221402
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|29784216|gb|CB344664.2|CB344664
EST:     ATTTAGTGAAACCTGTCTTTGCATCTGCATCTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110701457|gb|EE079053.1|EE079053
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110695795|gb|EE074220.1|EE074220
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAAGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAAATCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110379243|gb|EC944426.1|EC944426
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110420310|gb|EC986580.1|EC986580
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCATCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|22011827|gb|BQ796861.1|BQ796861
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCATCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|28965578|gb|CB344611.1|CB344611
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110715977|gb|EE090554.1|EE090554
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110428717|gb|EC995196.1|EC995196
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCATCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110385775|gb|EC950328.1|EC950328
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110701052|gb|EE078242.1|EE078242
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTNAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110707254|gb|EE083492.1|EE083492
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAACGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110420910|gb|EC987197.1|EC987197
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCATCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110689903|gb|EE066533.1|EE066533
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|34319070|gb|CF371824.1|CF371824
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110686704|gb|EE064648.1|EE064648
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|30131372|gb|CB916711.1|CB916711
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110690981|gb|EE068563.1|EE068563
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|351031033|gb|FQ444860.1|FQ444860
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110701108|gb|EE078347.1|EE078347
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACNAGCTGGAAACTGTCATCTTAAATGCTAGCGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|34415837|gb|CF414591.1|CF414591
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACCAGCTGAAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110700367|gb|EE078323.1|EE078323
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110688122|gb|EE066314.1|EE066314
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAACGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|33408674|gb|CF214301.1|CF214301
EST:     ATTTAGTGAAAACTGTCTTTGCATTTGCAACTGAGAGGGATATATACACC                         GGAGACAAGCTGGAAATTGTCATTTTAAATGCTAGTGGAATTTGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110401204|gb|EC967806.1|EC967806
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110398016|gb|EC964077.1|EC964077
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|351018518|gb|FQ424625.1|FQ424625
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|77588152|gb|DV223287.1|DV223287
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG
EST: gi|110722795|gb|EE099369.1|EE099369
EST:     ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACT                         GGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGCGGAATTCGTCGTGAG
genomic: ATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttctt ... tgttttgcagGGAGACAAGCTGGAAATTGTCATCTTAAATGCTAGTGGAATTCGTCGTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGCTGTTACTCCTCTCTCTGAGCCAGAAGCAGTTGATTTAGTGAAAACTGTCTTTGCATCTGCAACTGAGAGGGATATATACACTgtaggttcttttctccacctacttgaaagtaacatttttcacatagagctgttatgctcttttaactatgttggatccttgaaagtgcttcaggtttctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtaa