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ATCAAAACTACAGAGCAAATTGAAAGAATGAGAGAAACTTGCCGAgtgagtttctattccaaactttttttgtctaaaattattgtttgatgaagcaaatttgtcttgctacatgttttctttgtgcttggatgttgagtttaca...
species | Vitis vinifera |
transcript | Vv15s0048g00490.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAAAGAATGAGAGAAACTTGCCGA ATTGCAAGGGAGGTTTTGGATGCAGCTGCTCGTGTTATTCGACCTGGTGTGEST: gi|32270889|gb|CD720048.1|CD720048
genomic: GAAAGAATGAGAGAAACTTGCCGAgtgagtttct ... tcgcattcagATTGCAAGGGAGGTTTTGGATGCAGCTGCTCGTGTAATTCGACCTGGTGTG
EST: GAAAGAATGAGAGAAACTTGCCGA ATTGCAAGGGAGGTTTTGGATGCAGCTGCTCGTGTTATTCGACCTGGTGTGEST: gi|110689166|gb|EE065152.1|EE065152
genomic: GAAAGAATGAGAGAAACTTGCCGAgtgagtttct ... tcgcattcagATTGCAAGGGAGGTTTTGGATGCAGCTGCTCGTGTAATTCGACCTGGTGTG
EST: ATCAAAACTACAGAGCAAATTGAAAGAATGAGAGAAACTTGCCGA ATTGCAAGGGAGGTTTTGGATGCAGCTGCTCGTGTAATTCGACCTGGTGTG
genomic: ATCAAAACTACAGAGCAAATTGAAAGAATGAGAGAAACTTGCCGAgtgagtttct ... tcgcattcagATTGCAAGGGAGGTTTTGGATGCAGCTGCTCGTGTAATTCGACCTGGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAAACTACAGAGCAAATTGAAAGAATGAGAGAAACTTGCCGAgtgagtttctattccaaactttttttgtctaaaattattgtttgatgaagcaaatttgtcttgctacatgttttctttgtgcttggatgttgagtttaca
- - - - - AGAGCA
- - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa