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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGCTGCAAAAGGTATTGGTCGCATAACTTCACGTCTGACATCTGCCCTTTCGGATGAGGTTTTGTCATCTGTATTGGAACTGTTTTCACCAGGCGAGgtatgctggtcagttgcctccttttgtctgttccaaaattttgtaaccaaaatggccagcaatcatgttacaaaagcttagaagttacatatacctgggaataccattgccatgcccatgactcttcatttcttcctttgtttatctttgtccaattttgagaaattaaatgttatactgatacgtcatatgtttgtag

Basic information

species Vitis vinifera
transcript Vv15s0048g00470.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 6
GTCTGCTGCAAAAGGTATTGGTCGCATAACTTCACGTCTGACATCTGCCCTTTCGGATGAGGTTTTGTCATCTGTATTGGAACTGTTTTCACCAGGCGAGgtatgctggtcagttgcctccttttgtctgttccaaaattttgtaaccaaaatggccagcaatcatgttacaaaagcttagaagttacatatacctgggaataccattgccatgcccatgactcttcatttcttcc-tttgtttatctttgtccaattttgagaaattaaatgttatactgat-acgtcatatgtttgtag
|||||| |||||||||||||| ||||||| ||||| ||| |||||| || |||| || |||||||| |||||||| ||||| ||||||||||| || ||||| || || | |  |      |  |    |||||  |    ||||||  |     | ||   | |  |||||    | | |    |  ||||||      |||   ||    ||     |  |    || |   |  ||| ||| |||  || | | | | | |  | | |||| | |||  | ||               
GTCTGCAGCAAAAGGTATTGGGCGCATAAGTTCACATCTTACATCTTCCTTTTCTGAGGAGGTTTTATCATCTGTTTTGGAGCTGTTTTCACCTGGTGAGgtgtgatgctaaacttttgtttgcttaaagttcctgagcactgtaactta-----ctagt--ttaatttacactcacctggg---tttatatact-----atatagttaatgtgtgagaggtttactatgttaactatttatttgtctg-gttctactgttatagctcacatgtaacactttttacag-------------

upper sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G24470.1 (Glycine max), 5'ss of exon 7
GTCTGCTGCAAAAGGTATTGGTCGCATAACTTCACGTCTGACATCTGCCCTTTCGGATGAGGTTTTGTCATCTGTATTGGAACTGTTTTCACCAGGCGAGgtatgctggtcagttgcctccttttgtctgttccaaaattttgtaaccaaaatggccagcaatcatgttacaaaagcttagaagttacatatacctgggaataccat-tgccatgcccatgactcttcatttcttcctttgtttatctttgtccaattttgagaaattaaatgttatactgatacgtcatatgtttgtag
|||||| |||||||||||||| ||||||| ||||| ||| |||||| || |||| || |||||||| ||||| || ||||| ||||||||||| || ||||| || |  | |  |      |  |    |||||  |    |||||   |  |    |     ||  | ||  | | ||| |   || || ||  |      ||  | ||  |||   |  |   |  |  | ||  ||||| |      || | | | | | |  | |||||| | |||  | |               
GTCTGCAGCAAAAGGTATTGGGCGCATAAGTTCACATCTTACATCTTCCTTTTCTGAGGAGGTTTTATCATCAGTTTTGGAGCTGTTTTCACCTGGTGAGgtgtgatactaaacttttgtttgcttaaagttcctgagcactgtaatttacttttttaatttacac-tcacctaggtttatatactatatgtagtt------actgtgtgagatgtttactatgtt--agctatttatttgtctg-----gttccactgttatagctcaaatgtaacactttttcag-------------

upper sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G60740.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCTGCTGCAAAAGGTATTGGTCGCATAACTTCACGTCTGACATCTGCCCTTTCGGATGAGGTTTTGTCATCTGTATTGGAACTGTTTTCACCAGGCGAGgta-----tgctggtcagttgcctccttttgtctgttccaaaattttgtaaccaaaatggccagcaatcatgttacaaaagcttagaagttacatatacctgggaataccattgccatgcccatgactcttcatttcttcctttgtttatctttgtccaattttgagaaattaaatgttatactgatacgtcatatgtttgtag
|||||||||||| ||||| |||||  | ||||||||||| |||||||  || || |||||||| ||||||||||||||||| || ||||||||||| ||||||     ||  | |  |    |     |||  ||| |  ||||     ||  ||||         |||  | |   |    ||     || |||     |  |                                                                                                    
GTCTGCTGCAAAGGGTATAGGTCGTGTTACTTCACGTCTAACATCTGTTCTGTCTGATGAGGTGTTGTCATCTGTATTGGAGCTTTTTTCACCAGGAGAGgtactcgttgtggatatggcagcatggcttgcgtgtacttaaatcc---aattaaaagcatgcattatctagctgacagttattgtggttttcatggcattcag----------------------------------------------------------------------------------------------------