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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAATTTGGTTATTCTTTAGGGACATGTTCAAAGGAATTGGGTTATCCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcag

Basic information

species Vitis vinifera
transcript Vv15s0046g02040.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g45650.1 (Oryza sativa), 5'ss of exon 6
CAAACAATTTGGTTATTCTTTAGGGACATGTTCAAAGGAATTGGGTTATCCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataatttgctaatattgaaaacagctagaggttatttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttg-gtggcag
||||| |||||| | ||| ||||||||||| ||||||| |||  | ||||||| |||||||| || || || |||||||| || ||  | |||||||||||| | |  | |  |  ||    | ||         || ||  | |   || | |   || |     |     |   || || |||| | | ||       |      ||  |      ||   | | | | | ||| ||     ||| ||||   || |   |||
CAAACTATTTGGCTCTTCATTAGGGACATGATCAAAGGGATTTTGCTATCCATCTTACTTGGACCTCCTATTGTGGCTGCTATTATCATCATAGTACAGgtatc-tcctgtctttctaccacacac---------ttcttcattg---ttggctagtatctggagaacaggcttacctgtt-ttttgcgggatctgggcccgaataccacaaactcgtagaagtgtgtga-actgatta-----gtttatttctctgtgcttcag

upper sequence: Vv15s0046g02040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G39150.1 (Glycine max), 5'ss of exon 6
CAAACAATTTGGTTATTCTTTAGGGACATGTTCAAAGGAATTGGGTTATCCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataatttgctaatattgaaaacagctagaggtt--atttgtagcatttagttgtgattttccacatgatttagtctcttatttttctgcattcttctgctttcctcattactgtcaagcgttctctaatagtgactaacaatgttcatttgcttggtggcag
||||||   ||||||||||||||||||||| | |||||||||    | ||  |  || |||| ||||| || ||||||||||||||||| |||||||||||||   ||| | ||  |||| |||| | |||    ||  |    |||| |    ||  ||||| | |  || | | |  |   | || | |    | ||    ||   |  | |   ||| | |   | |   ||                               
CAAACACCATGGTTATTCTTTAGGGACATGCTTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATTGTGGCTGCAATCATTGTAATAGTACAGgtaa---aatcttctgctatttaaaataactatcactttaaaacttagcttgatatttggatttcctagctgttcttgatttagagttatttttggttttgattttctattttaatgttcatgtgaattttggcag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814570|gb|FQ399210.1|FQ399210
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCCATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|30304044|gb|CB980838.1|CB980838
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351052220|gb|FQ452374.1|FQ452374
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351043081|gb|FQ451254.1|FQ451254
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|110700064|gb|EE077676.1|EE077676
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351012828|gb|FQ430391.1|FQ430391
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351045038|gb|FQ449292.1|FQ449292
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|30304107|gb|CB980901.1|CB980901
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351040629|gb|FQ438173.1|FQ438173
EST:     CCATTTTACCTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCCATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351033796|gb|FQ447834.1|FQ447834
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|349820667|gb|FQ408496.1|FQ408496
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCCATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351044625|gb|FQ443156.1|FQ443156
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351043828|gb|FQ452622.1|FQ452622
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
EST: gi|351029807|gb|FQ427647.1|FQ427647
EST:     CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAG                         AAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG
genomic: CCATTTTACTTGGGCCACCCATCGTGGCTGCAATCATTGTTATAGTACAGgtaacataat ... ttggtggcagAAAGGAGGTCCTTATTTGGCCATCTATCTTTGGGGATTTATGTTTATTCTG