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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaagttagatagtccaagatgtcaaaaaatgacaaatgatagttgatgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag

Basic information

species Vitis vinifera
transcript Vv15s0046g02030.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 5'ss of exon 6
TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaagttagatagtccaagatgtcaaaaaatgacaaatgatagttgatgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag
| | || || || || || || ||||||||||     |||||||| ||||||||||||||||| |||||||| ||    ||||| ||||||| ||| |||||| |    | |   ||   | | ||| || | || |   | |||   |     | |  | |   | |  |  ||   | ||| | | |||   |                                             
TCTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttctactcactta--tgaactttttgatttcttccatttactaaacagtatagttaactcattttctgattgcaattgttca-tcatacag--------------------------------------------

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G39160.1 (Glycine max), 5'ss of exon 6
TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaagttagatagtccaagatgtcaaaaaatgacaaatgatagttgatgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag
 ||  ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| || |||||  ||||||    ||||         ||||   || | |||||| |||| || |   ||  | |      ||    ||||   |  ||||    |  |     | || ||    |        || |  ||| ||| || |      | |  ||
GTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCAAAAATGGGACATGTGATACACATGCTTGAGGCAGACGACCTGTTATTCCATACTgta---------tgttctttttaccttcttaaattttacattataacttgattggaat----aaaagcaatcaatgtctttcaacattgctatgatgtgatactcacttaaactttttttttcttctttcctatctatag

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G47170.1 (Glycine max), 5'ss of exon 6
TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaag-ttagatagtccaagatgtcaaaaaatgacaaatgatagttgatgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag
 ||  ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||  ||||||    |||| |     |||   |  ||   |||  |  ||||||   | || ||      |   ||  |  || ||| |     |   |  |  ||                                                   
-TTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACCAAGAGGCCAAAAATGGGACATGTGATCCACATGCTTGAAGCAGATGACCTGTTATTCCATACTGtatgttctttttaccttcttatactttatacattatatttgattggaataaaaacattgctatgaagtgatactcactttcttttctatagg------------------------------------------------

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 6
TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaagttagatagtccaa--gatgtcaaaaaatgacaaatgatagttg--atgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag
 || |||||||| || |||||||| ||||||||  |||||||||| ||||| |||||||| ||||||||||| ||||| || |||||  ||||||| |||||  |          ||| |    |||||  || | || |  |||| |     ||   ||   || |||   ||| |  | ||||  ||       ||||  |||   |||| | ||   |||| ||| |              
GTTGGTTGCTCTTCGATGTGTTGACCCTGATGCGGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtg----------ttcttctcccttctcaaactttacattttagttgactgaaccaataataagaaagttcaattttttgttgtaatctgatgcttatatcttttctttc-atccttcttgtctgtag--------------

upper sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 7
TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaagttagatagtccaa--gatgtcaaaaaatgacaaatgatagttgatgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag
 || ||||||||  | ||||| || || |||||| |||||||||| ||||| |||||||| ||||||||||| ||||| || |||||  ||||||| |||||  |          ||| ||   |||||  || | || |  |||| |     ||   ||   || ||||  ||| |      | ||       || | ||||   |||    ||    ||| ||| |              
GTTGGTTGCTCTTAGATGTGTCGACCCGGATGCAGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtg----------ttcttttcccttctcaaactttacattttagttgactgaaccaataataagaaatttcaattttgctgtaatctgatgcttctggcttttgtttt-gtccttcctgtctgtag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71886865|gb|DT035920.1|DT035920
EST:     CACATGCTTGAGGCCGATGACCTACTATTCCGAGAT                         GAGCGCCGCATTGGCAGAGAATCATCCCATTCCCATCACGATTATCAGCAA
genomic: CACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatca ... tattttgcagGAGCGCCGCATTGGCAGAGAATCATCCCATTCCCATCACGATTATCAGCAA
EST: gi|110377663|gb|EC942742.1|EC942742
EST:     TGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGAT                         GAGCGCCGCATTGGCAGAGAATCATCCCATTCCCATCACGATTATCAGCAA
genomic: TGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatca ... tattttgcagGAGCGCCGCATTGGCAGAGAATCATCCCATTCCCATCACGATTATCAGCAA