Sequence
atgc intronic sequence ATGC exonic sequenceATATTGATTCCATGGGTTGTGGAATATCCAGCTGTCATGTTGTAAATGGAGTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaattttccatcttgaccttagggtatgttaataagtgctccagttttttgccctaaccattgtgttataagataactagtggtgcatagagag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 6
ATATTGATTCCATGGGTTGTGGAATATCCAGCTGTCATGTTGTAAATGGAGTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaattttccatcttgacc--ttagggtatgttaataagtgctccagttttttgccctaaccattgtgttataagataactagtggtgcatagagag-----
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ATATTGACTCCATGGGTTGTGGTTTATCAAGTTGTCATGTAGTTAATGGAGTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactttctctatttcacataattcctttatgttactca-taggggacaatattacaattaagattgtct------gtagatggtcttgcatggctagctttt
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 6
ATATTGATTCCATGGGTTGTGGAATATCCAGCTGTCATGTTGTAAATGGAGTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaattttccatcttgaccttagggtatgttaataagtgc-tccagttttttgccctaaccattgtgttataagataactagtggtgcatagagag-
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ATATTGACTCCATGGGTTGTGGTATATCAAGTTGTCATGTAGTTAACGGAGTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGAgtgagaac-tttctcaactacacataattcctttatgttactcatatagaggtcaatattacaattaagattgtttac-atgtctagctttttaagttgtct
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G46420.2 (Arabidopsis thaliana), 5'ss of exon 6
ATATTGATTCCATGGGTTGTGGAATATCCAGCTGTCATGTTGTAAATGGAGTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaattttccatcttgaccttagggtatgttaataagtgctccagttttttgccctaaccattgtgttataagataactagtggtgcatagagag-
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ATCTTGATCCTATGAGCTGTGGAATGTCAAGCTGCCATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTCCAACCAATGAGGATCAACTCAGGGAATGAgtaagaa------ctaacttgga-ttgagttttgtttttgcatttttggtgctttagacttaagaactaattcctactgttgtttccggtgcttggtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110703971|gb|EE081373.1|EE081373EST: GTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGA TATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAG
genomic: GTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaat ... gtttttgaagTATGGTGAGGGACACCAGCACAGCAGATGTAGCACCTGTTATTCCACCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATTGATTCCATGGGTTGTGGAATATCCAGCTGTCATGTTGTAAATGGAGTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaattttccatcttgaccttagggtatgttaataagtgctccagttttttgccctaaccattgtgttataagataactagtggtgcatagagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa