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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTTGGATTTAACCCTGCTGATGTTGATATAATGCGGAAACCACCTCGTAAAAGTGATGATGCTCTGATAAACTCTTGGGTTCTCTTCCGTTACTTGgttagtattcatcaattttcctttcttcactttcatcacctttcatcacttgctgcaaccatcaagagtatagaatgatcgactttgatatcagttgtattgaactaatccccatgtccataatggcag

Basic information

species Vitis vinifera
transcript Vv15s0046g00040.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G05890.1 (Glycine max), 5'ss of exon 6
AGCTCTTGGATTTAACCCTGCTGATGTTGATATAATGCGGAAACCACCTCGTAAAAGTGATGATGCTCTGATAAACTCTTGGGTTCTCTTCCGTTACTTGgttagtattcatcaattttcctttcttcactttcatcacctttcatcacttgctgcaaccatcaagagtatagaatgatcgactttgatatcagttgtattgaactaatccccatgtccataatggcag
||||||||| ||||||||||| |||||||||||||||| ||| |||||||| | |||||||||| |||| ||||  ||||||||||| ||||||||  ||||  || |   || ||      |     ||||   |    |||    | ||  |  |   | |        |  || |   | |  || |  |||||  ||||| |                       
AGCTCTTGGTTTTAACCCTGCCGATGTTGATATAATGCAGAAGCCACCTCGCAGAAGTGATGATCCTCTAATAAGTTCTTGGGTTCTTTTCCGTTATCTGgtaggtttaactcgatcaaaaatctaaaacttgagttgaatttgtgtaatttttatacagacc-------caacataactcaatcagaaacaagttgggttgaattg----------------------

upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G02490.1 (Glycine max), 5'ss of exon 8
AGCTCTTGGATTTAACCCTGCTGATGTTGATATAATGCGGAAACCACCTCGTAAAAGTGATGATGCTCTGATAAACTCTTGGGTTCTCTTCCGTTACTTGgttagtattcatcaattttcctttct-tcactttcatcacctttcatcact-tgctgcaaccatcaagagtatagaatgatcgactttgatatcagttgtattgaactaatccccatgtccataatggcag
||||||||| ||||||||||||||| ||||||| |||| |||||||||||| | || ||||||| |||| ||||  ||||||||||| ||||||||  ||||  || ||   ||| | || | ||  |    | ||  || || |||  || ||||  || |||    | | | ||   |   |||| |||  || ||   |  |                          
AGCTCTTGGTTTTAACCCTGCTGATATTGATATCATGCAGAAACCACCTCGCAGAAATGATGATCCTCTAATAAGTTCTTGGGTTCTTTTCCGTTATCTGgtacgttttgcccaagtctcttctcaatttaatgcacaactttgcatgtctatgcta-aagcattctcattgtggacaaa---acttagatg-caattccttaca--------------------------