1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGGAAGAGCACAGATGGATTTAGCATTGGCAACATTTTACTAGATTTATGTGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccag
species | Vitis vinifera |
transcript | Vv14s0219g00120.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGEST: gi|351045861|gb|FQ441046.1|FQ441046
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
EST: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG ATTCTTGGGTGAACEST: gi|110699274|gb|EE076127.1|EE076127
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAAC
EST: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG ATTTCT-GGGTGAACTTCTATGGNAATATAGGAAAAGCTCT-GCTATNCTTEST: gi|110696243|gb|EE075180.1|EE075180
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATT-CTTGGGTGAACTTCTATGGAAATATAGGAAA-GCTCTTGCTAT-CTT
EST: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG ATTCTTGGGTGAACTTCTAAGGAAATATAAGAAAGCTCTTGCTATCCTTGEST: gi|110724366|gb|EE100141.1|EE100141
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
EST: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAG ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGEST: gi|34549515|gb|CF517747.1|CF517747
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG
EST: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACGATC ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTC
genomic: TGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatt ... cttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAAGAGCACAGATGGATTTAGCATTGGCAACATTTTACTAGATTTATGTGGAGGAGTGGCTAATTATGCACAGATGACAGTGCAGTCTATAGACCAAGgtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG