Sequence
atgc intronic sequence ATGC exonic sequenceCATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacagggctcttggcagattgtaattcaatttactagtcctgcaataaggattcatactaatgcttttgtcactcattttatgttcctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G24520.1 (Glycine max), 5'ss of exon 5
CATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacagggctcttggcagattgtaattcaatttactagtcctgcaataaggattcatactaatgcttttgtcactcattttatgttcctcag
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CATTCACAATGTTCGTTGGTATTACCTTCCCATTCTTTAGTGGTCTCCTAGGATTTTTTGGGGGATTTGCTTTTGCACCAACAACATACTTTgtaagt-caaataaattagtaaatt-taatc--acacagtaatcttgc--ttaaattccttaacggttcattt-----tcttccttaaattttcag
upper sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G06750.1 (Glycine max), 5'ss of exon 5
CATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacagggctcttggcagattgtaattcaatttactagtcctgcaataaggattcatactaatg-cttttgtcactcattttatgttcctcag
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CATTCACAATGTTCGTTGCTATTACCTTCCCATTCTTCGGTGGTCTCCTAGGATTTTTTGGAGGATTTGCTTTTGCACCAACAACATACTTTgtaagc-caaatacattggtgaatt-taatc--acacaataatctttaggggggaaaataaattcttaactgttaattttcttgcttaatttttcag
upper sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G22590.1 (Glycine max), 5'ss of exon 6
CATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacagggctcttggcagattgtaattcaatttactagtcctgcaataaggat--tcatact-aatgcttttgtcactcattttatgttcctcag
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CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAGGATTTTTTGGAGGGTTTGCTTTTGCTCCAACAACATACTTTgtaagc-catgaataattatacattttaatcca-ttaacttcccttaggattattataattgtgtttaactgtttattttcttattcgtatttttttag
upper sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G48640.1 (Arabidopsis thaliana), 5'ss of exon 7
CATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacag-----ggctcttgg---cagattgtaattcaatttactagtcctgcaataaggattcatactaatgcttttgtcactcattttatgttcctcag------------
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CTTTAACGATGTTCATTGGGATAATGATACCGTTCTTTGGGGGCCTTCTCGCTTTCTTTGGAGGATTTGCGTTTGCTCCAACATCGTATTTTgtaagtgtatatattggttcttaaattttgaacttaacgcagattaattttcatgtatagtaaatttcaaatagtgtatatataaact-ttgtatgctttacaatttgttatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700407|gb|EE078411.1|EE078411EST: GCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTT CTGCCTTGCGTAATGTGGCTCGCCATTTACAAGCCTAGGAAATACAGCCTA
genomic: GCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacag ... tgttcctcagCTGCCTTGCGTAATGTGGCTCGCCATTTACAAGCCTAAGAAATACAGCCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacagggctcttggcagattgtaattcaatttactagtcctgcaataaggattcatactaatgcttttgtcactcattttatgttcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT