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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGAGGGAGATGACAAATATTTGATTGCAACAGCCGAACAACCCCTCTGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaacttgtgaaccctatttgtctcacggtatctacaaaagaatggtggttaatattacatgttttcccag

Basic information

species Vitis vinifera
transcript Vv14s0128g00370.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G37700.1 (Glycine max), 5'ss of exon 6
CTGGTGAGGGAGATGACAAATATTTGATTGCAACAGCCGAACAACCCCTCTGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaacttgtgaaccctatttgtc--tcacggtatctacaaaagaatggtg--gttaatatt----acatgttttcc-cag
||||||| ||||||||||||||| ||||||||||||| || || || |||||||| |||||||| ||||||||||| || ||| ||||| |||| |||||||||     | || |       |  |||       ||    |  || |  ||| ||   ||||  ||    | ||||||||  |||
CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCTGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCATTAAGgtaa-tatgatttttttttgtcacctgttaacattggagcttggaagactatgttgccattaactttggaaatatgttttctgcag

upper sequence: Vv14s0128g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G29600.1 (Glycine max), 5'ss of exon 6
CTGGTGAGGGAGATGACAAATATTTGATTGCAACAGCCGAACAACCCCTCTGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaacttgtgaaccctatttgtc--tcacggtatctacaaaagaatggtgg--ttaatatt----acatgttttcc-cag
||||||| ||||||||||||||| ||||||||||||| || || || |||||||| |||||||| ||||||||||| || ||| ||||| ||||  ||||||||    || || |       | ||||     | ||    |  || |  ||| ||   ||||  ||    | ||| ||||  |||
CTGGTGAAGGAGATGACAAATATCTGATTGCAACAGCAGAGCAGCCACTCTGTGCATATCATTTAGATGATTGGATCCACCCTACCCAGCTACCAATAAGgtaa-tataatttttttttgtcacttgttaacaatggagcttggaagactatgttgcctttaactttggaaatatgctttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110427592|gb|EC994039.1|EC994039
EST:     TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAG                         ATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCACGGTCG
genomic: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaa ... gttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCG
EST: gi|29784787|gb|CB341220.2|CB341220
EST:     TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAG                         ATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCACGGTCG
genomic: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaa ... gttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCG
EST: gi|110375281|gb|EC940255.1|EC940255
EST:     TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAG                         ATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCACGGTCG
genomic: TGTGCTTATCATTTGGATGATTGGATACATCCTTCCCAGTTACCCTTAAGgtaaacccaa ... gttttcccagATATGCTGGATATTCATCTTGTTTTCGTAAAGAGGCTGGATCGCATGGTCG