1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATATGCCGATGGAAGCATCTGTTTGGATATTCTACAGAACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggggtttgtttgattgtcgattgctttttatttaattagtaaaatatccaatttctgtttttggatgaatatttaccatgttactatgatata...
species | Vitis vinifera |
transcript | Vv14s0108g00140.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCAGTGGAGTCCCATATATGATGTCGCTGCTATTCTTACTTCTATCCAG TCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCAEST: gi|110695924|gb|EE074493.1|EE074493
genomic: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggg ... gttatttcagTCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCA
EST: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAG TCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCAEST: gi|32459632|gb|CD800806.1|CD800806
genomic: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggg ... gttatttcagTCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCA
EST: CAGTGGAGTCCCATATATGAGATGTTGCTGCTATTCTTACTTCTATCCAG TCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCAEST: gi|30296124|gb|CB972918.1|CB972918
genomic: CAGTGGAGTCCCATATAT--GATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggg ... gttatttcagTCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCA
EST: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAG TCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCAEST: gi|110372214|gb|EC936367.1|EC936367
genomic: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggg ... gttatttcagTCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCA
EST: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAG TCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCAEST: gi|110715525|gb|EE093678.1|EE093678
genomic: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggg ... gttatttcagTCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCA
EST: ACCAGTGGAGTCCCATATATGATGTCGCTGCTATTCTTACTTCTATCCAG TCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCA
genomic: ACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggg ... gttatttcagTCACTGCTTTGTGATCCCAACCCAAACTCGCCCGCTAATTCAGAAGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATGCCGATGGAAGCATCTGTTTGGATATTCTACAGAACCAGTGGAGTCCCATATATGATGTTGCTGCTATTCTTACTTCTATCCAGgtattatggggtttgtttgattgtcgattgctttttatttaattagtaaaatatccaatttctgtttttggatgaatatttaccatgttactatgatata
- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa