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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCTAGTGAgtaagctctcatgctccctttacattttacccttttttttggctgcatttaaagcatttattcatctctttttggttgtaatctattgaag

Basic information

species Vitis vinifera
transcript Vv14s0108g00130.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g05250.2 (Oryza sativa), 5'ss of exon 6
TACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCTAGTGAgtaagctctcatgctccctttacattttacccttttttttggctgcatttaaagcatttattcatctctttttggttgtaatctattgaag--------------------
| || ||| |||| ||||| || || ||||||||||| || || ||  || |||||||||||||||| ||||| || || || |||||||||||||||||||||| |||   ||| |||||    |  || |||||  ||   || |||||    |  |||| || | || |       ||  | ||||                      
TGCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCTAGTGAgtaagatct---gcttcctttctcatacactcttttagttca-tgaattta---tacatatttatat-ttataaaccagaagttcttgagactacccaaccgctttttcag

upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g05250.3 (Oryza sativa), 5'ss of exon 6
----TACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCTAGTGAgtaagctctcatgctccctttacattttacccttttttttggctgcatttaaagcatttattcatctctttttggttgtaatctattgaag--------------------
    | || ||| |||| ||||| || || ||||||||||| || || ||  || |||||||||||||||| ||||| || || || |||||||||||||||||||||| |||   ||| |||||    |  || |||||  ||   || |||||    |  |||| || | || |       ||  | ||||                      
AAAGTGCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCTAgtgagtaagatct---gcttcctttctcatacactcttttagttca-tgaattta---tacatatttatat-ttataaaccagaagttcttgagactacccaaccgctttttcag

upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G028928_T02 (Zea mays), 5'ss of exon 5
TACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCTAGTGAgtaagctctcatgctccctttacattttacc--cttttttttggctgcatttaaagcatttattcatctctttttggttgtaatctattgaag------
| || ||  |||| |||||||| || ||||| ||||| || || || ||| |||| |||||||| || ||||| || || ||||| |||||||||||||||||||  |   | |     | || | ||  |  |  ||||||  |   |||| |    |  |   |    ||| |  |  |  || ||           
TGCAAGTTGAGAACCCTGCTGCTTTGGCTTCGAATCCTGGAAAGCGTGTAGCAGCCTGTTGGGAGCCCACAGTTATTGCAACAATCATTATTCCTAGTGAgtaagaccctcttcctttctcacctgttctctacaattttttttcaatatttgagcattacaaatagaagtttgttatcatgctcaatcactttttcag

upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G46900.1 (Glycine max), 5'ss of exon 6
TACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCTAGTGAgtaagctctcatgctccctttacattttacccttttttttggctgcatttaaagcatttattcatctctttttggttgtaatcta--ttgaag
|| | || |||||||| ||| ||||| | || ||||||    |   ||| ||||| |||||||||||||||||| ||||||| || || ||||||||||||||||||||  | || || | |  | | |   || |||   ||||||      |   ||    ||||   |||  | || || ||  ||  ||
TAGAAGTTCAGAATCCCGCTTCATTACCCTCTAATCCCAAGCATAAAGTGACAGCCTGTTGGGAACCTACAGTGTTAGCTACTATAATCATTCCTAGTGAgtaagctcttgtactaccctga-gtataat--ttatttaacgctgcagagcctgatgttcgctatcttaatttattggtgatttaatttttag

upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G39400.1 (Glycine max), 5'ss of exon 7
TACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCTAGTGAgtaagctctcatgctccctt---tacattttacccttttttttggctgcatttaaagcatttattcatctctttttggttgtaatctattgaag
|| | || |||||||| ||| ||||| | || |||||     |   ||| ||||| |||||||||||||||||  ||||||| || || ||||||||||||||||||||  | |  || |   || | || |     |  |   |   |   |      | | || || | ||  || || |||| | | |   
TAGAAGTTCAGAATCCCGCTTCATTACCCTCTAATCCTAAGCATAAAGTGACAGCCTGTTGGGAACCTACAGTATTAGCTACTATAATCATTCCTAGTGAgtaagctcttgtacaaccctgagtataattgatttactgctccagagcctgatgttcgctatcttaatttattgctgatt-taatttttag---