Sequence
atgc intronic sequence ATGC exonic sequenceCGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagctttatgaacataaaccttggaagaacttatcttcttgctcgtattatctctgaacagaagttgaatagtttatcgtattgaaggttgttttaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 7
CGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagctttatgaacataaaccttggaagaacttatcttcttgctcgtattatctctgaacagaagttg-aatagtttatcgtattgaaggttgttttaat--
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TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcactcgcatatttcgcttaaca-tttgtttgattatgattattattatt-agtagtagtagtagtagttcagtgaag-gattcctatattattat
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G20300.1 (Glycine max), 5'ss of exon 10
CGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagctttatgaaca--taaaccttggaagaacttatcttcttgctcgtatta-tctctgaacagaagttgaatagtttatcgtattgaaggttgttttaat
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TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTATAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcatatttcgcttaacatttgtttgattattattattattaggaggagtagttcagtgaaggattcctatattat--tatttaacatggctttgt-
upper sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 7
CGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagctttatgaacataaaccttggaagaacttatcttcttgctcgtattatctctgaacagaagttgaatagtttatcgtattgaaggttgttttaat-----
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TGATGTATATTCTTTTGGGGTTGTGCTGTTGGAACTAATTACAGGTCGGAAGCCGGTAGATGCATCTCAACCAATCGGTGATGAGAGCCTGGTTGAATGGgtgag--tcacaaatttc--ccctaacatatgtttgattagtagtagt-ttagtgaaggattcctgtattattatttgacgtggcttagtaggttcagatattgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110372905|gb|EC937101.1|EC937101EST: AACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGG GCTCGACCATTGCTTGCTCAAGCCCTTGATTCTGGAAACTTTGAAGGGTTG
genomic: AACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagcttta ... tgctcttcagGCTCGACCATTGCTTGCTCAAGCCCTTGATTCTGGAAACTTTGAAGGGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagctttatgaacataaaccttggaagaacttatcttcttgctcgtattatctctgaacagaagttgaatagtttatcgtattgaaggttgttttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaga