Sequence
atgc intronic sequence ATGC exonic sequenceCAACTAGAGATGCTAAAGCACATGCGCAAATTTCACCTGGATGATCAATCTGTAATCCTTGAAAAGgtacctgcctatgtatgcttgttcccccacatagaatatcagtttgaagcctcagacataggatgattttatcttgatttatgaaacctcatatagaaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G06060.2 (Glycine max), 5'ss of exon 3
CAACTAGAGATGCTAAAGCACATGCGCAAATTTCACCTGGATGATCAATCTGTAATCCTTGAAAAGgtacctgcctatgtatgcttgttcccccacatagaatatcagtttgaagcctcagacataggatgattttatcttgatttatgaaacctcatatagaaga--------
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CAACTAGAGATGCTGAAGTACATGCGCAAGTTTCACTTGGAAGATCAATCTGCCATCCTTGAGAAGgtaaatactggttt----caatctcagtacagggagatttgtttcaaatcttgaga---agcattgctgcttattggtct-caggatattatttaaatgtaaagtgat
upper sequence: Vv14s0068g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G27050.1 (Arabidopsis thaliana), 5'ss of exon 6
CAACTAGAGATGCTAAAGCACATGCGCAAATTTCACCTGGATGATCAATCTGTAATCCTTGAAAAGgtacctg----------------cctatgtatgcttgttcccccacat-agaatatcagtttgaagcctcagacataggatgattttatcttgatttatgaaacctcatatagaaga----------------------------------------------------------------------------------
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CAACTAGAGATGCTTAAGTATATGCGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGgtaaacaaaaacaaaaaaaaaactgtttttacactttttaactaccatgataatattttccattagcatgaacagaaaaagtgttttattatggcttttggtccatcttgcttaccggtaaatgagaaactgtctgagtctagtgaggactgattcatattagattggtctaatattcgttgttcttgtaccaaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27580358|gb|CB003053.1|CB003053EST: AGCACATGCGCAAATTTCACCTGGATGATCAATCTGTAATCCTTGAAAAG TTGCGTCAGCAGATGGAAAAAGCCAATTTTGAGAGTGAACCATCAATTTTG
genomic: AGCACATGCGCAAATTTCACCTGGATGATCAATCTGTAATCCTTGAAAAGgtacctgcct ... gttcttccagTTGCGTCAGCAGATGGAAAAAGCCAATTTTGAGAGTGAACCATCAATTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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CAACTAGAGATGCTAAAGCACATGCGCAAATTTCACCTGGATGATCAATCTGTAATCCTTGAAAAGgtacctgcctatgtatgcttgttcccccacatagaatatcagtttgaagcctcagacataggatgattttatcttgatttatgaaacctcatatagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaaa