Sequence
atgc intronic sequence ATGC exonic sequenceGCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtacttctctagtttctgcttctagatccctttttgtgatgaagttttttaattttcctatttcttttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 7
GCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtacttctctagtttctgcttctagatccctt---tttgtgatgaagttt---tttaattttcctatttcttttttcag---------------------
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GCTTCTCGCGCAAAATATGCCACCATTTCTGGAGCTCACCGGCGTGTCGGGACTACATATGCTCAATTAGTCGCTGCACTGTCTGCAGCTTACAATCTGGgtatttctgctattcactctgcttattctagtaagtgcatgtttggtttcacgtaggattctttaaagtcttgttgaaatatcggataacatgatttgag
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G26840.1 (Glycine max), 5'ss of exon 7
GCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtactt-ctctagtttctgcttctagatccctttttgtgatgaagttttttaattttcctatttcttttttcag
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GCATCTCGCACTAAATATACTGTTGTCTCCAGAGCTCATCGGCACGTTGGAACTACCTATGCTCAATTAATCGCTGCATTGGCTGCAACACGCAATCTGGgtacatgcatttccctcaccccctgtattatttgttattacttatttcttcaaacataccactgaag-------
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 6
GCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtacttctctagtttctgcttctag-atccctttttgtgatgaagttttttaattttcctatttcttttttcag----------------
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GCATCTCGAGCTAAATATGCTGTTGTCTCTGGAGCTCATCGGCGCGTTGGAACTACCTATGCTCAACTAATCGCTGCACTGGCTGCAACACGCAATCTGGgtacatgcatttcccccaccccttgtattatttgttgttacttgtttcttcaaacataccactgaagcatccaaaaactattttcttcag
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 6
GCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGg------tacttctctagtttct-----gcttctagatccctttttgtgatgaagttttttaattttcctatttcttttttcag-------
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GCGTGCCGTGCTAAACATGCGGTGATCTCCGGTGCTAACAGGCGAGTTGGGACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCGGCAAACAGTCTCAgttaagatcgttttttagtttcctcaacacttatttttctttccttctgatctgtctcattaacagtactccttgactggttaattcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689285|gb|EC936620.1|EC936620EST: AACCACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCG AGGAGAATACTTCTAGTTCCTGGAACTTTTCCTTCTTCAGCAGCTTCCAGA
genomic: AACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtacttctct ... cttttttcagAGGAGAGTACTTCTAGTTCCTGGAACTTTTCCTTCTTCAGCAGCTTCCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtacttctctagtttctgcttctagatccctttttgtgatgaagttttttaattttcctatttcttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG