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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag

Basic information

species Vitis vinifera
transcript Vv14s0068g01280.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G128995_T02 (Zea mays), 5'ss of exon 4
CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag
 || ||  |||| |||||| | ||||||||||||||||||||||||||||| || || || |||||||||||||  ||||| | | |    |  |  ||||||||    | ||||   || | |   |     |||    |||         |  | ||||  | |    ||  ||      ||    |  |    | ||                                                                                        
TATGATCACCTCGGAACATCTCGTGACACTTCTTGCAATTGTTCCCAAGTACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaaatttt---ggttgtgcttgtctgcttgttagaacctcccaaatcgacatattttttcttataactttccttttgaagagaattgaataatgtt-------------------------------------------------------------------------------------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G144372_T01 (Zea mays), 5'ss of exon 6
CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag
 || ||  |||| |||||| | ||||||||||||||||| ||||||||||| || || || |||||| ||||||  ||||| ||| |   ||  | |||||||||    | |||    |  |  |   |  |  |     |  || || || |     ||  | || |   |  |||  |  |   || | | |  |    ||| || ||                                                                              
TATGATCACCTCGGAACATCTTGTGACACTTCTTGCAATCGTTCCCAAGTACTCCCAAAAAGACTGGCTGTCAAGCTATGAGACACTTGATACATTTGTGgtaaggttaaatttc---gattgcactcttcatttatcatgctttctgctcat-----tacaacctcc--caaattgaaatatttttcttataacttt---cctcttgaagag---------------------------------------------------------------------------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 6
CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag
 ||  |   |||||| ||| |||| ||||||||||| |||||||| ||||| || || || |||||||||||||  |||||| || |    |  | ||||||||    || ||||    ||| |   |  |            ||||||| ||            | |||   |||  | |    ||| |     | || ||  ||  | ||    ||| | ||||||                                                            
TATGGTCTGCTCAGAGCATCTAGTAACACTTCTTGCTATTGTTCCAAAGTACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatg-ttacttttct--gctgtgcttcat------------ttatggtgct-----------tttcagcctgtt--ttagaacctcctaaatcggcaaacacttccatttaaaagagaaattgaat------------------------------------------------------------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 6
CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtagg-ttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag
 |||||  | |||||| |||||   || |||||||||||||||||||||||||| |||||||| ||| | || |  |||||||||||||| |  ||||||||||||  ||  || | ||   ||||| || ||  |  ||    ||    ||  |   ||| ||     |  || ||   ||  |  |  | |    | ||                                                                                        
TATTATAACTTCAGAAAATTTAACCACCCTTCTTGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTATCTAGCTATGAAACATTGACAAATTATGTGgtaagagttaccttctttgctcatatactcaaatatctgctg-ctacttcccaaagattattataaatggggggattcacaatagttttctcttgattaat----------------------------------------------------------------------------------------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G27360.1 (Glycine max), 5'ss of exon 6
CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag
|||| |  | |||||| |||||   || || |||||||||||| |||||||||| |||||||| ||| | ||||  || ||||||||||| | |||||||||||| | ||   | |     |    ||| | | ||        ||    |||  |  |||  |     |    | | |        | | | || |   | ||                                                                                    
CATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTACGAAACATTGACAAACTATGTGgtaagtagtaccatgttcccttgc-cattttgaatttcttttgctacttcccttgaattattgttaatggatcttagttgtaaaatccctataatct---atct------------------------------------------------------------------------------------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 6
CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag
 |||||  | |||||| |||||   || ||||| |||||||||||||||||||| |||||||| ||| | || | ||||||||  ||||| | |||||||||||||  ||  || ||||   ||||| || ||  |  |    | ||   ||  |   ||  ||     ||   |    |  |   ||   |||| | ||                                                                                        
TATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGgtaagagttaccttctctgttcatatactcaaatctctgttgctaatt-ccccaagattactataaatggtgattcacaatatttttctcttgat-taatga--------------------------------------------------------------------------------------

upper sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G05470.1 (Glycine max), 5'ss of exon 6
CATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaactattttttctggctatatattctaacttaagcgaattatggtcctgaagatatcatctgcagtaggttggtaactggctcgtgtgatgtcataccttttaaatttctggagtatttgaatacattgtttgactttttgttcattgtaatcttcctgattaattgagctaacctctttcag
|||| |  | |||||| |||||   || || |||||||||||| |||||||||| |||||||| ||| | ||||  |||||||||||||  |  ||||||| |||   ||   | |      |   |||  || ||        ||    |||  |  |||  |     |    | | |        | |||||| ||||                                                                                        
CATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGATAAATTATGTGgcaagtcgtaccatattaactcaccaatttgaatttcttttg-ctacttcccttgaattattgttaatggatcttggttgtaaaatccctgtgat-tcatct--------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031454|gb|FQ446657.1|FQ446657
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349830231|gb|FQ420491.1|FQ420491
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349827680|gb|FQ422548.1|FQ422548
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|351024893|gb|FQ433310.1|FQ433310
EST:     ATTCCCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110699022|gb|EE077184.1|EE077184
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110693329|gb|EE069475.1|EE069475
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACNATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349833078|gb|FQ416456.1|FQ416456
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCCAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110688297|gb|EE066689.1|EE066689
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|351022393|gb|FQ445168.1|FQ445168
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|161716182|gb|FC069494.1|FC069494
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCAT
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCAT
EST: gi|351013608|gb|FQ429749.1|FQ429749
EST:     ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|71887796|gb|DT036851.1|DT036851
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|110693330|gb|EE069469.1|EE069469
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTAATGAA-CATTGACTAGCTATGTG                         GTCTCCAGGTCATCCAAGAA-CTTG-ATGAAGACA-TGAGTATG-TCCATA
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCT-GCATGAAGACAATGAGTATGCTCTATA
EST: gi|110700866|gb|EE077894.1|EE077894
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GACCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC
EST: gi|349830278|gb|FQ420538.1|FQ420538
EST:     ATTCTCAGAAGGACTGGTTGTCAAGTTATGAAACATTGACTAGCTATGTG                         GTCCCCAGGTCATCCAAGAAGCTGCATGAAGACNATGAGTATGCTCTATAC
genomic: ATTCTCAGAAGGACTGGTTGTCAACTTATGAAACATTGACTAGCTATGTGgtaagaacta ... cctctttcagGTCCCCAGGTCATCCAAGAAGCTGCATGAAGACAATGAGTATGCTCTATAC