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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTCACTCAAATATCGAGGCCTCCTCTGCCGCAACAACACAAGCTACAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtgaacacctttgcatccaattaatataaaatattaacacagtttttggcttgcttcacttgctctatttatagatacaccataaatagatca...

Basic information

species Vitis vinifera
transcript Vv14s0068g00800.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371177|gb|EC934993.1|EC934993
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|110405448|gb|EC970989.1|EC970989
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|110406346|gb|EC971916.1|EC971916
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|34415325|gb|CF414079.1|CF414079
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|110403781|gb|EC969537.1|EC969537
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|30126331|gb|CB911670.1|CB911670
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGNGGCCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|30131604|gb|CB916943.1|CB916943
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|34542538|gb|CF510770.1|CF510770
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|110700860|gb|EE077882.1|EE077882
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTANATCTTCATGG                         TGTTGGTGGGTGCTGGGCA-TTGTCNTGTTGGTGGTGGGCATTCTTCTTAN
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGG-CAATTGTCGTGTTGGTGGTGGTCATTCTTCTTAT
EST: gi|110423298|gb|EC989640.1|EC989640
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
EST: gi|71870813|gb|DT019868.1|DT019868
EST:     CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGG                         TGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT
genomic: CAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtg ... ttctcaacagTGTTGGTGGGTGCTGGCAATTGTCGTGTTGGTGGTGGTCATTCTTCTTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACATTCACTCAAATATCGAGGCCTCCTCTGCCGCAACAACACAAGCTACAGCACAGCTTTCTAAGGCTTCTAAAAGTGTGAAATCTAGATCTTCATGGgtaagtagtgaacacctttgcatccaattaatataaaatattaacacagtttttggcttgcttcacttgctctatttatagatacaccataaatagatca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataga