1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATGCATTGGTCTATCAGCTTCTGAAGATTTTTCTCACTCAGAGGCTTGATGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATGgtaattgttttctgatcttgcaacatttaaaaccctgttctggtagatgacctagccaattttcttttatttggaatttgcatctgggaatgttgcag
species | Vitis vinifera |
transcript | Vv14s0068g00220.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATG GTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGGEST: gi|37187675|gb|CF607028.1|CF607028
genomic: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATGgtaattgttt ... aatgttgcagGTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGG
EST: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATG GTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGGEST: gi|87586086|gb|DY474543.1|DY474543
genomic: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATGgtaattgttt ... aatgttgcagGTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGG
EST: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATG GTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGGEST: gi|110421499|gb|EC987796.1|EC987796
genomic: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATGgtaattgttt ... aatgttgcagGTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGG
EST: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATG GTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGG
genomic: TGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATGgtaattgttt ... aatgttgcagGTCTTGTCCATGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGCATTGGTCTATCAGCTTCTGAAGATTTTTCTCACTCAGAGGCTTGATGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATGgtaattgttttctgatcttgcaacatttaaaaccctgttctggtagatgacctagccaattttcttttatttggaatttgcatctgggaatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC