Sequence
atgc intronic sequence ATGC exonic sequenceGGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatattacattttctcaagaatctagctagctaggttactcaattcaatggatttgaaaaaaccagaagcatgaaagtactatatggtataaccttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os12g26290.6 (Oryza sativa), 5'ss of exon 7
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaa--------tattacattttctcaagaatctagctagctaggttactcaat--tcaatggatttgaaaaaaccagaagcatgaaagtactatatgg-tataaccttt------------------------------------------------------------
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AATTGGTCACTTCTGCTGTTATTGCAAAGGTTCACACTATTGATTGGACTGTCGAGCTTCTCAAGACAAAAACCATGAGAGCTGCAATGCGCGCAAATTGgtgaggatgcatttatctcattttctcatatttgccgaaagaaaaaaaatataaccattgatgcgggtattacttttccaagtggaaattttatttacatctgcaaattcaaattaattaaattagtgagaatgtgtacaatttacctgatattctgattcttttgtgaag
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G312997_T01 (Zea mays), 5'ss of exon 6
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaa----atatta---cattttctca-----------agaatctagcta--gctag-gttactcaattcaatgga---tttgaaaaaaccag-aagcatgaaagtactatatggtataaccttt------------------------------------
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GATTGGTCACTTCTGCTGTCATTGCAAAGGTTCACACTATTGATTGGACTGTGGAGCTTCTCAAGACTAAGACCATGAGAGCTGGAATGCGCGCAAATTGgtgaggatatattatctcattttctcatatttgttgaaagaaaacaattaacgctggtattacttttccaagtggaaattttatttacatctgcaaattcaaataaattaattagtgagattgtgtacaaatttacctcatattctaattcttttgtgaag
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G100724_T01 (Zea mays), 5'ss of exon 4
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaa----atatta---cattttctca-----------agaatctagctagc--tag-gttactcaattcaatgga---tttgaaaaaaccagaagcatgaaagta-ctatatggtataaccttt----------------------------------
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GATTGGTCACTTCTGTTGTCATTGCAAAGGTTCACACTATTGATTGGACTGTCGAGCTTCTCAAGACTAAGACCATGAGAGATGGAATGCACGCAAATTGgtgaggatatattatctcgttttctcatatttgttgaaagaaaacaattaacactggtattacttttccaagtggaaattttatttacatctgcaaattcaaattaattaattagtgagattgtgtacaaatttacctcgttctaattcttttgtgaag
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 6
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatattacattttctcaagaatctagctagctaggttactcaat--tcaatggatttgaaaaaaccagaagcatgaaagtactatatggta--taaccttt
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GATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACCATTGATTGGACTGTAGAGCTCCTTAAAACTGATACTTTACTTGCAGGCATGCGTGCCAATTGgtaagactcagaatgccacaag---ttaactttgtatctttttaaaaaatttatggatcaaaattatattttcatttggaa-tactataaaaaaatcaagcaag
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 6
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatattacattttctcaagaatctagctagctaggttactcaattcaatggatttgaaaaaaccagaagcatgaaagtactatatggtataaccttt-
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GATTGGTGACCTCAGCTGTGATTGCAAAGGTTCATACGATTGATTGGACTGTAGAGCTCCTTAGAACTGATACTTTACTTGCAGGCATGCGTGCTAATTGgtaagacactctgaatgccacaagtttcacatgtacagccacactcattatcgttattaatttagtatcatttaaaaaaat-ttatgtgttgtaattatat
upper sequence: Vv14s0066g01670.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G01420.1 (Arabidopsis thaliana), 5'ss of exon 6
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatat-tacattttctcaagaatctagctagctaggttactcaattcaatggatttgaaaaaaccagaagcatgaaagtactatatggtataaccttt
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GGCTAGTGACCTCAGCCGTGGTAGCCAAGATTCACACCATAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGCGAGCAAATTGgtcaatatataccactttttttttttttgaatctataatgaatcacgttacgtacagacgttgcattctaacacttttgaatattgtg-attttag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706450|gb|FC055497.1|FC055497EST: GTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTG GTATGGACTGCTGGGAAAGAAATTCAAGG
genomic: GTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatatta ... taattttcagGTATGGACTGCTGGGAAAGAAATTCAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTGGTGACTTCTGCTGTAATTGCAAAAATTCATACCATAGATTGGACTGTGGAGCTTCTCAAAACCGATACACTACTTGCAGGAATGCGCGCCAATTGgtaaatattacattttctcaagaatctagctagctaggttactcaattcaatggatttgaaaaaaccagaagcatgaaagtactatatggtataaccttt
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagta