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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATCTGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctctctctctctctctcctgtcaaattgatggataagagtctgcactcagtgtctgtattttatcttcctcgtatcattcatgacattcatccacatgaatcctcaagttttctgatcctgaacccaataaatagcttatgtctaaatttgtgacag

Basic information

species Vitis vinifera
transcript Vv14s0066g01660.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 6
TGGCAAGGATTATGAATTTGATGCTCCAGTCAAGCTGTTGGATAAGCATCTGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctctctctctctctctcctgt--caaattgatggataagagtctgcactcagtgtctgtattttatcttcctcgtatcattcatgacattcatccacatgaatcctcaagttttctgatcctgaacccaataaatagcttatgtctaaatttgtgacag
||| || |||||||||||||||||||| || |||||  |||| || |||||  | || |||||||| || || ||||| || |||||||| ||| ||||||| |||   |   | || ||||  | |   |  |||     ||  | | |     |||  |  | || |  || | ||   |  |||    | |||  |                                                                  
TGGTAAAGATTATGAATTTGATGCTCCGGTTAAGCTTCTGGAAAAACATCTACATTCTATGGCACAGTCTGTTGATGAGCAGCTTGTTGTTGTTTCTCAGgtttctgcattcatttccctctaatattttagcttgtctattaccattttatcaccagaataag-atgtgctcatgcttaaa--atttgctatattgttag----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71882339|gb|DT031394.1|DT031394
EST:     TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAG                         GTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
genomic: TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctct ... tttgtgacagGTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
EST: gi|71884182|gb|DT033237.1|DT033237
EST:     TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAG                         GTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
genomic: TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctct ... tttgtgacagGTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
EST: gi|71885148|gb|DT034203.1|DT034203
EST:     TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAG                         GTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
genomic: TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctct ... tttgtgacagGTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
EST: gi|34546836|gb|CF515068.1|CF515068
EST:     TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAG                         GTGCTTGTGGCAGACATTAATATTGGATATGAGGAAA
genomic: TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctct ... tttgtgacagGTGCTTGTGGCAGACATTAATATTGGATATGAGGAAA
EST: gi|71883362|gb|DT032417.1|DT032417
EST:     TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAG                         GTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
genomic: TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctct ... tttgtgacagGTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
EST: gi|71884579|gb|DT033634.1|DT033634
EST:     TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAG                         GTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG
genomic: TGTACTCAATGGCACAATCCGTCGATGAACAACTTGTTGTGGTTGCTCAGgtctctctct ... tttgtgacagGTGCTTGTGGCAGACATTAATATTGGATATGAGGAAATTGTCAATACACAG