1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAGATTGCGAGTTATTATGAAGATTATTACAAGTCTAAAGGAGTAAAGTTCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaacttaatgctagtttagaatgtggagaccaattgctcgttggccttgttgtactatggaaacatggaccagacaatggttgctgatatttgcta...
species | Vitis vinifera |
transcript | Vv14s0066g01100.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAG GTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTTEST: gi|110388004|gb|EC952716.1|EC952716
genomic: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaactt ... cattctacagGTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTT
EST: TCATAAAAGGAACGCCCTTGTCATCATTTGATATCGACGACTCTGGAAAG GTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTTEST: gi|156739125|gb|EV243238.1|EV243238
genomic: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaactt ... cattctacagGTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTT
EST: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAG GTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTTEST: gi|110686783|gb|EE064815.1|EE064815
genomic: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaactt ... cattctacagGTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTT
EST: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAG GTCACAGCAGTTACTCTCANGGATGGGAATCGGCTCCCTGCAGACATGGTTEST: gi|37189057|gb|CF608406.1|CF608406
genomic: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaactt ... cattctacagGTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTT
EST: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAG GTCACAGCAGTTACTCTCAGGGATGGGAATTGGCTCCCTGCAGACATGGTTEST: gi|32267694|gb|CD716657.1|CD716657
genomic: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaactt ... cattctacagGTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTT
EST: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAG GTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTT
genomic: TCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaactt ... cattctacagGTCACAGCAGTTACTCTCAGGGATGGGAATCGGCTCCCTGCAGACATGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGATTGCGAGTTATTATGAAGATTATTACAAGTCTAAAGGAGTAAAGTTCATTAAAGGAACGGCCTTGTCATCATTTGATATCGACGACTCTGGAAAGgtaaaaacttaatgctagtttagaatgtggagaccaattgctcgttggccttgttgtactatggaaacatggaccagacaatggttgctgatatttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaca