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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGGGAGGGATAACACCAAAGCCTGCGTAAAAAATGTCACGGTTCGAGACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaaagcatcctaccactcctccaagtcccttctctaatcatcctgaagggaaaaggggggaaacggaaggaaagcagctctgaaaaacacaataatgctacaatttattcagacgcctctgatatatgatctccaaccatctcatagttttatcatttggcactgcag

Basic information

species Vitis vinifera
transcript Vv14s0066g01060.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g44970.1 (Oryza sativa), 5'ss of exon 6
TCTAGGGAGGGATAACACCAAAGCCTGCGTAAAAAATGTCACGGTTCGAGACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaaagcatcctaccactcctccaagtcccttctctaatcatcctgaagggaaaaggggggaaacggaaggaaagcagctctgaaaaacacaataatgctacaatttattcagacgcctctgatatatgatctccaaccatctcatagttttatcatttggcactgcag
 |||||  |||| ||||| ||||| || ||    ||||| || ||  ||||  |||  |||      || ||||||||||||||||||||||| ||||||||||   |||||    |    | |||     | ||  | | |    ||  |  |       |  ||  ||| ||||       || ||| | |  |     | ||  |                                                              
CCTAGGCCGGGACAACACAAAAGCATGTGTCTCCAATGTTACTGTAAGAGATGTCAACATGTTCAGAACCATGACTGGTGTCAGAATCAAGACCTGGCAGgtaagcacatccctttataggtacaaacaaatcct--acttaataggacagtcattacattgtcacaaaagaaaag-------gataaatatatcatcttcataaactt-------------------------------------------------------------

upper sequence: Vv14s0066g01060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os05g50260.1 (Oryza sativa), 5'ss of exon 4
TCTAGGGAGGGATAACACCAAAGCCTGCGTAAAAAATGTCACGGTTCGAGACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaaagcatcctaccactcctccaagtcccttctctaatcatcctgaagggaaaaggggggaaacggaaggaaagcagctctgaaaaacacaataatgctacaatttattcagacgcctctgatatatgatctccaaccatctcatagttttatcatttggcactgcag
|||||| ||| | ||||| ||||| || |||   |||||||| ||  ||||  |||  |||    | ||||||||||||||||||||||| || ||||||||||    |  ||   |              | |   ||| | |   |     | || |   |||   |  || |    || || |                                                                                    
TCTAGGAAGGTACAACACAAAAGCATGTGTATCCAATGTCACCGTAAGAGATGTCAACATGTTCAAAACAATGACTGGTGTCAGAATCAAAACTTGGCAGgtaagcataatctggtagatgatgtgactagtccaacaatgaccaccatatacacagagctaaaaaacactgacattc-ctatgcag-----------------------------------------------------------------------------------

upper sequence: Vv14s0066g01060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G002034_T02 (Zea mays), 5'ss of exon 4
TCTAGGGAGGGATAACACCAAAGCCTGCGTAAAAAATGTCACGGTTCGAGACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaaagcatcctaccactcctccaagtcccttctctaatcatcctgaagggaaaaggggggaaacggaaggaaagcagctctgaaaaacacaataatgctacaatttattcagacgcctctgatatatgatctccaaccatctcatagttttatcatttggcactgcag
||||||||||   ||||| || || |||||    || ||||| || |||||  |||  |||      |||| ||| |||||||||||||||||||||||||||        |  ||  | |  ||      | |  ||  ||  | | ||    | |      ||        || |  || || |                                                                                    
TCTAGGGAGGTTCAACACGAAGGCGTGCGTGTCCAACGTCACCGTACGAGATGTCAAGATGTTCAGGACAACGACGGGTGTCAGAATCAAGACATGGCAGgtacg------ccgcccgtacgtcagaataatgcagtag-caggcagcagcagcaggcctaataattactaataaac--ctttgcag-----------------------------------------------------------------------------------

upper sequence: Vv14s0066g01060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G037431_T01 (Zea mays), 5'ss of exon 6
TCTAGGGAGGGATAACACCAAAGCCTGCGTAAAAAATGTCACGGTTCGAGACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaa---agcatcctaccactcctccaagtcccttctcta-atcatcctgaagggaaaaggggggaaacggaaggaaagcagctctgaaaaacacaataatgctacaatttattcagacgcctctgatatatgatctccaaccatctcatagttttatcatttggcactgcag
 |||||  | || ||||| ||||| || |||  |||||| || ||  ||||  |||  |||      || |||| |||||||||||||||||| ||||||||||       | | ||        | || | |    || | ||||  |   ||   | |     |  ||  ||| |||  |   || ||||| |  |                                                                            
ACTAGGCCGAGACAACACAAAAGCATGTGTATCAAATGTTACAGTAAGAGATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttgagaacatatgtacaaacaaaattctaattcaacatcagacattagtacagaataatgtcacaaaagaaaaaaaaaactaaaaaaaaggaat--------------------------------------------------------------------------

upper sequence: Vv14s0066g01060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G179696_T03 (Zea mays), 5'ss of exon 6
TCTAGGGAGGGATAACACCAAAGCCTGCGTAAAAAATGTCACGGTTCGAGACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaa----agcatcctaccactcctccaagtcccttctctaatcatcctgaagggaaaaggggggaaacggaaggaaagcagctctgaaaaacacaataatgctacaatttattcagacgcctctgatatatgatctccaaccatctcatagttttatcatttggcactgcag
 |||||  | || ||||| ||||| ||||||  |||||| || ||  ||||  |||  |||      || |||| |||||||||||||||||| ||||||||||     || |    |  ||   |  || | |    ||||||    |    || |  ||     ||  |  |  || |   |     ||||    | ||                                                                         
ACTAGGCCGAGACAACACAAAAGCATGCGTATCAAATGTTACAGTAAGAGATGTCAACATGTTCAGAACCATGAATGGTGTCAGAATCAAGACCTGGCAGgtaagcttgagaacataagtacaaata-aaattctaattctaattcaacatccggcattagtacataatagttaataatgtcacaaaagaaaatctgaaaa-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371123|gb|EC934902.1|EC934902
EST:     ACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAG                         GGCGGTTCTGGCTCAGTGAGTGGGGTCATGTTCTCAAACATTCAAGTTTCT
genomic: ACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaaagcat ... ggcactgcagGGCGGTTCTGGCTCAGTGAGTGGGGTCATGTTCTCAAACATTCAAGTTTCT
EST: gi|110381463|gb|EC934529.1|EC934529
EST:     ACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAG                         GGCGGTTCTGGCTCAGTGAGTGGGGTCATGTTCTCAAACATTCAAGTTTCT
genomic: ACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaaagcat ... ggcactgcagGGCGGTTCTGGCTCAGTGAGTGGGGTCATGTTCTCAAACATTCAAGTTTCT
EST: gi|110363249|gb|EC926825.1|EC926825
EST:     ACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAG                         GGCGGTTCTGGCTCAGTGAGTGGGGTCATGTTCTCAAACATTCAAGTTTCT
genomic: ACATCACAATGCAGGATACAATGACTGGTGTCAGAATCAAGACATGGCAGgtaaaagcat ... ggcactgcagGGCGGTTCTGGCTCAGTGAGTGGGGTCATGTTCTCAAACATTCAAGTTTCT