Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGAGGTTCGGAAGATTGCAGCAGATCTACTAGTTAATCCTGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAGgtgtggaagctgttcttgacttaccacaaaacagattaagaatgtttatgttattctggctctgacaacaagagatggagtttcttatgtcacttctattatatttttctattgaagtacttctctcattgttttcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G00260.1 (Glycine max), 5'ss of exon 6
GAAGGAGGTTCGGAAGATTGCAGCAGATCTACTAGTTAATCCTGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAGgtgtggaagctgttcttgacttaccacaaaacagattaagaatgtttatgttattctggctctgacaacaagagatggagtttcttatgtcacttctattatatttttctattgaagtacttctctcattgttttcttgcag
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AAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTCCAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAACAAGTCTATTACTCAGgtttgatgtctgctactgctatacttgggtgcactgttttattttccccgcttgtttcattctcatgcca----------tttttcttgttacta-tatcag----------------------------------------
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G08750.1 (Glycine max), 5'ss of exon 10
GAAGGAGGTTCGGAAGATTGCAGCAGATCTACTAGTTAATCCTGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAGgtgtggaagctgttcttgacttaccacaaaacagattaagaatgtttatgttattctggctctgacaacaagagatggagtttcttatgtcacttctattatatttttctattgaagtacttctctcattgttttcttgcag
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AAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTACAGGTGAACATTGGGAATGTAGATGAGCTTGTTGCTAATAAGTCCATTACTCAGgtttgatgtctgctactgctatacttgggtgca--------atgttt-tattttccccgctttcattctta----tgccatttttcttgttacta-tatcag----------------------------------------
upper sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G14610.2 (Arabidopsis thaliana), 5'ss of exon 6
GAAGGAGGTTCGGAAGATTGCAGCAGATCTACTAGTTAATCCTGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAGgtgtggaagctgttcttgacttaccacaaaacagattaagaatgtttatgttattctggctctgacaacaagagatggagtttcttatgtcacttctattatatttttctattgaagtacttctctcattgttttcttgcag
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AAAGGAGGTGAGGAAAATCGCAGCTGATCTTCTTGTTAACCCTGCCCAGGTCAATATTGGTAATGTTGATGAGCTTGTGGCGAACAAGTCCATTACTCAGgtctgggt-ttgatttcgttttgttact---catttta-----gtttg-attatcttgaca-taataacagga-atgga---tctgatagcttctttaat-tatttatatgatacag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110401171|gb|EC967771.1|EC967771EST: TTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAG TATGTTGAAGTATTGCCATATATGGAGAAACACAAGCGGTTGGAGCAGATA
genomic: TTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAGgtgtggaagc ... tttcttgcagTATGTTGAAGTATTGCCATATATGGAGAAACACAAGCGGTTGGAGCAGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGAGGTTCGGAAGATTGCAGCAGATCTACTAGTTAATCCTGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAGgtgtggaagctgttcttgacttaccacaaaacagattaagaatgtttatgttattctggctctgacaacaagagatggagtttcttatgtcacttctattatatttttctattgaagtacttctctcattgttttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT