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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAGgtttgaattttccttcatcttttcaaccattcagttttgggcaatcagccgtttttcttgaatgattaaaccaacacagtaggagaggattagattgaagtcaatttcttggtcttgcccag

Basic information

species Vitis vinifera
transcript Vv14s0060g02190.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G42170.1 (Glycine max), 5'ss of exon 6
GAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAGgtttgaattttccttcatcttttcaaccattcagttttgggcaatcagccgtttttcttgaatgattaaaccaacacagtaggagaggattagattgaagtcaatttcttggtcttgcccag---
| || || || |||||||||||  | || |  |||||||||||||||||| | || || || |||||||| ||||||||||| ||||||||||||| |  |||  |||  | || |   |   |  | |||| | |  |            ||||  | |  ||     |  |  || ||| | |  ||    |   | | ||   ||| ||| |   
GTGTTCTTGTAGTGCTGGATGCTTGTCCCGATGGAATCATATACAGAGATCTAATACCCGATTATGTAAATTTTGCAAGGACTATATATGAAGgttagggtttctctttcttttctaggctgct--gctttgtgaagcc------------tgaa--acttgacagtttctttcagaaaggttgacttt----tttgtgttttcaccttcccctgtag

upper sequence: Vv14s0060g02190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G39550.1 (Glycine max), 5'ss of exon 6
GAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAGgtttgaattttccttcatcttttcaaccattcagttttgggcaatcagccgttttt--cttgaatgattaaaccaacacagtaggagaggattagattgaagtcaatttcttggtcttgcccag--
| || ||||| ||||||||||| || || |  || |||||||| |||||  | || ||||| |||||||| ||||||||||| ||||||||||||| | ||||   ||  | || |  ||   |   ||   |  | |   |  || ||  ||||||   ||    ||  |  || |       |  | ||    |||  |||    ||    |     
GTGTTCTGGTAGTGCTGGATGCTCGTCCTGATGGGATCATATATAGAGACCTAATACCTGATTATGTAAATTTTGCAAGGACTATATATGAAGgttaggatttctgtttcttttctatactgctgctttcctgaaacttgacatttattagcttgaaattttcgttcagaaaggttgacttttttgtgttt----tcaccttccccctcccctctgtag

upper sequence: Vv14s0060g02190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G27710.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGTCCTGGTGGTGCTGGATGCCCGCCCAGGAGGAATCATATACAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAGgtttgaat----------tttccttcatctt-ttcaaccattcagttttgggcaatcagccgtttttcttgaatgattaaaccaacacagtaggagaggattagattgaagtcaatttcttggtcttgcccag---------
| || || ||||| || ||||| |  || |  |||||||||||| ||||| |||||||||||||||| || |||| ||| || ||||| |||||||||||            |||  ||||||   ||| | |||   ||    | |     |  ||  |     ||   || ||  | |   |   | ||  |||   |  | | ||  | |  |||||  ||           
GTGTACTTGTGGTTCTTGATGCGCATCCGGATGGAATCATATACCGAGATCTCATCCCTGACTATGTTAAGTTTGTAAGAACAATATACGAAGgtttgaacaactctataccttctctcatctcactcatcaatttgcttcattgtagatcacatttgattacacatacatacactcaaagtctcttaaagatttatgctctattgaaactttatgtcttatccttctccaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579026|gb|CB001721.1|CB001721
EST:     CAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAG                         ATGATTTTGGAGATGTTGCAGTTGATGTCAACTACTTGAATGTGGGAAATG
genomic: CAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAGgtttgaattt ... tcttgcccagATGATTTTGGAGATGTTGCAGTGGATGTCAACTACTTGAATGTGGGAAATG
EST: gi|30328734|gb|CD011996.1|CD011996
EST:     CAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAG                         ATGATTTTGGAGATGTTGCAGTTGATGTCAACTACTTGAATGTGGGAAATG
genomic: CAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAGgtttgaattt ... tcttgcccagATGATTTTGGAGATGTTGCAGTGGATGTCAACTACTTGAATGTGGGAAATG
EST: gi|30328427|gb|CD011689.1|CD011689
EST:     CAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAG                         ATGATTTTGGAGATGTTGCAGTTGATGTCAACTACTTGAATGTGGGAAATG
genomic: CAGAGATATCATCCCTGACTATGTAAAATTTGCAAGGACCATATATGAAGgtttgaattt ... tcttgcccagATGATTTTGGAGATGTTGCAGTGGATGTCAACTACTTGAATGTGGGAAATG