Sequence
atgc intronic sequence ATGC exonic sequenceATGCATGTTGGGCACTGTCTTATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTgtgagtttttagaaattttgagttagttctggacttcttttggctgtgggatgtgttgtttccattaatttgtacctcgggcctgaacttctttcttggactttggtcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 6
ATGCATGTTGGGCACTGTCTTATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTgtgagtttttagaaattttgagttagttctggacttcttttggctgtgggatgtgttgtttccattaatttgtacctcgggcctgaacttctttcttggactttggtcag
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ATGCATGTTGGGCACTGTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTGCTGCTgtgagtactctgcttctcaaatatggctatgcaaaaatatatgctcc----catgttcattttaatg--ccaaacactaaatgtgctactcttattcag-----------
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 6
ATGCATGTTGGGCACTGTCTTATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTgtgagtttttagaaattttgagttagttctggacttcttttggctgtgggatgtgttgtttccattaatttgtacctcgggcctgaacttctttcttggactttggtcag
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ATGCATGTTGGGCACTGTCATATCTTTCTGATGGCACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTGCTGCTgtgagtactctgcttctcgaatatggctatgcaaaaatatatgctccc--atgtgtcattttaat-gccaaatactaaatgtccta--ctcttattcag-----------
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 7
ATGCATGTTGGGCACTGTCTTATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTgtgagtttttagaaattttgagttagttctggacttcttttggctgtgggatgtgttgtttccattaatttgtacctcgggcctgaacttctttcttggactttggtcag
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ATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGGTGTAATTGAAGCTGGTGTTTGTAGCCGGCTTGTTGACCTTCTTTTgtgagtactttgca-tacaaatgtggatgtgtagaaatatacgtattccagtgttgttctgctgtcaaattctaaatattattcta--ctcttcttcag-----------
upper sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 6
ATGCATGTTGGGCACTGTCTTATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTgtgagtttttagaaattttgagttagttctg--gacttcttttggctgtgggatgtgttgtttccattaatttgtacctcgggcctgaacttctttcttggactttggtcag
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ACGCTTGTTGGGCACTTTCATATCTTTCTGACGGTACAAATGACAAAATTCAAGGTGTAATTGAAGCTGGTGTTTGTAGCCGGCTTGTTGAGCTTCTATTgtgagtact-atgaatgcaaatatggatgtgcagaaatatacgtattgtcaaat-tctaaatattattctactcttcttcag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359173|gb|EC920237.1|EC920237EST: CAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAGCTTTTACT TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACAT
genomic: CAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTgtgagttttt ... ctttggtcagTCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCATGTTGGGCACTGTCTTATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTgtgagtttttagaaattttgagttagttctggacttcttttggctgtgggatgtgttgtttccattaatttgtacctcgggcctgaacttctttcttggactttggtcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC